Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4329 ATGACATCAATGGCGACAATGAGCAGCATTGGTTCACAATTCCCAGGGAATTTGAGCAGTGCAAATAGGGAAAATGTGATCAAAACAGGTGAGGTTTTGAGGGTGAGGTTTTATTCTTCACATAACAATAACATATCAAACATCAATAAACAAAGACTTCCATTGGTGACATCAAGTTATCATGGTAGTCCTCAAAAAGTGGACACTGTCAATGGAACCAAGGTGAATGGAATACATGTAGCAGAAGCTCCTCTAGCAGCAAATGAATACAAAGCAGATGTGGGTCTTGTCACAAATGGAAGGTTTGTGGAGGGTAGGTTTGTGTATAGGCAAATTTTTGTCATCAGGTCTTATGAAATTGGACCAGATAAAACTGCCACCATGGAGACACTCATGAATTTTCTTCAGGAAACTGCTCTAAATCATGTCACCAGCTCTGGGATAGGTGGAGATGGCTTTGGAGCTACCCGCGAGATGAGCCTTCGGAAACTCATTTGGGTTGTTACTCGAATTCAGGTTCAAGTGCAGAGATACAGCAAATGGGGAGATGAAATTGAAGTTGATACTTGGGTTGATGCAGCAGGAAAGAATGGAATGAGAAGGGATTGGATAATCAGGGATCGTTACACCCAAGAGATCATAACAAGAGCTACAAGCATATGGGTGATCATGAATAGAGAAACAAGAAGACTATCCAAGATACCTGGAGAGGTTAAACAAGAGCTTGTGCCTTTTTACCTCAATAGGATTTCAATTCCTACTGAAGAAAGAGATTGTGAAAAGATAGACAAGCTCACTGATGAAACTGCTGAGAGAATCAGATCTGGGTTGGCTCCAAGGTGGAATGATATGGATGCTAACCAGCATGTGAACAATGTCAAATACATTGGATGGATGTTAGAGAGTGTGCCAATTGAAGTGCTGGGAGATTATAACATGACAAGCATGACACTGGAGTTTCGGCGCGAATGCACGCAAACAAATTTGTTAGAATCCATGACATGTCCAACAGAGAGGGTGATGAACGAGTCCAACAATTACTCCATCAGAAGACCTGACCTGCAATACACACACTTACTTCGTCTTCAACATGATAAATCAGATGTTGTCCGAGCCAGAACTGAATGGCATCTTAAGCAAAAGCAACAATGA 1152 0.4158 MTSMATMSSIGSQFPGNLSSANRENVIKTGEVLRVRFYSSHNNNISNINKQRLPLVTSSYHGSPQKVDTVNGTKVNGIHVAEAPLAANEYKADVGLVTNGRFVEGRFVYRQIFVIRSYEIGPDKTATMETLMNFLQETALNHVTSSGIGGDGFGATREMSLRKLIWVVTRIQVQVQRYSKWGDEIEVDTWVDAAGKNGMRRDWIIRDRYTQEIITRATSIWVIMNRETRRLSKIPGEVKQELVPFYLNRISIPTEERDCEKIDKLTDETAERIRSGLAPRWNDMDANQHVNNVKYIGWMLESVPIEVLGDYNMTSMTLEFRRECTQTNLLESMTCPTERVMNESNNYSIRRPDLQYTHLLRLQHDKSDVVRARTEWHLKQKQQ* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4329 383 Gene3D Hotdog Thioesterase 100 382 - -
Lja1g4329 383 PANTHER OLEOYL-ACYL CARRIER PROTEIN THIOESTERASE 1, CHLOROPLASTIC 33 382 IPR045023 GO:0006633|GO:0016297
Lja1g4329 383 PANTHER ACYL-[ACYL-CARRIER-PROTEIN] HYDROLASE 33 382 - -
Lja1g4329 383 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 266 376 IPR029069 -
Lja1g4329 383 Pfam Acyl-ACP thioesterase 108 377 IPR002864 GO:0006633|GO:0016790
Lja1g4329 383 SUPERFAMILY Thioesterase/thiol ester dehydrase-isomerase 107 251 IPR029069 -
Lja1g4329 383 CDD 4HBT 107 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4329 Lja-Chr1 55908225 55910741 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4329 100 379 Acyl Lipid Metabolism Gene Families AT1G08510 55.000 2.64e-106 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4329 K10781 - gmx:100791281 584.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4329 1 55908225 55910741 Lja1g4329 1 55908225 55910741 ECH