Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4325 ATGGGCGTGAGTTTGCTGAACGAGGACCTTCTTCACAACATTCTAACCAGGCTTCCTGCCCTATCGTTCGCTTCAGCAACTTGCGTTAGCAAAACGTGGAACTCTGTCTCCAATCGCATCCTTTCTCGTCCCAAGCTCTCCTCTGCGCTTTCTCTCAACCCTTCACCCAACGATGCAGTGAATGAGGTTCTTCACAAGATTCTGTCCGAGCCCATCCGACCTCATTTTGCTATTGTCAATCTTGCAGTTGGATTCGGAGCGTCCAAGATTCTGTGGCTTGTTACAAAGACATTGGGTTCCGATATTCCAGTTATTGTCTCCGTGACAAATGGTATTATGGGAAGGGATGCTCTTACGGGTGAATTTAAAGAGGTCAAGTGGGATGCCGATGCGCTTATAAGTGCCATTGTAGATGAGGGCATAGTGTTGACTGTTGGCTACTTGCCAGGATTAAAAGTTGAAGCTATACCATTGCAAAGACCAGCCAAGACACCTCAAGAACCATGGATTGACAATTTTGTGATGGATATCAAGGAATATTCTGCCTCTGTCTCCAGTTGCCAATTCACTGTTGGGATTATGCTGTTCGGAGAAGCAACCTCTGACATGGAACTGCTTCTGAAGAAATTGGACTATGCCATGCCGATGGACACATTCATTGTGGGTAATGAGCGAGGCTCCGTTGTATACAGAAGTGGAAATGATTATAGGAGCATCTGTGATAATACAAAGGACATAGAAGCTGTTGCTCTTGTATTTGCTCAAGACAAAGACAGGTCTTCTGGAAGTATTAGATTTCATATTGCATTCTCAAACGGTGTTTCAACTGTGGGTGCTAGATACAAGGCAGATTCAGTTCAAACAAACTTCGATGTATGTTCTACAAGGCTAATGGCTAGGCGGGAAGGGCAGCAGGAACTTCTTGATGGTCAGAGTATTCTACTTGAGCTTAAAAATTCGCTTCCGAAATTGCAGCAGATGGAGAATCACATCCAGAGACCAGAGTTCCTCATTCGGGTAATTAAACATAGGAAGTTCTCCATTGGAGCAGAGAAGCCAATGCCAAGAAAGTCTATTGCATATCATGGAGTTTTAGGAGTTGATGAAGAGTATCTATATGTTGATGGAATTGGCATAAAAAAAGGAGATATCTTTCAGTTCTACCATTCAGATCCTAATGCAGCGTTAGTGTCATTAACGGTGGTCCATGATGTGCTCAACAATATTAAGATGGGAAAAAATTCCAGGAGGTTCATGGGTGATGGAGACAACAGCATTAATGTTTTCGGCGGTTTTATTTTTGCTTGCTATGGCCGTGGTGAATCATTCTTTGGACGTCATGATGTGGATAGCTCCCCATTCTTGGAGAATTTCCCAGGAGTGCCATTGGGTGGCATATTTTGTTGTGGTGAAATAGTTCGTCCTTGTACCCCTTTGATTGGCCAGCATCAAGGAGCAGGCCCCATTAGTTTCTGTTTGCATACTTATGGCACTGTCTATTTAGTGATGTCATATGCTCCTCCCTCTGTGGAACAATAG 1539 0.4379 MGVSLLNEDLLHNILTRLPALSFASATCVSKTWNSVSNRILSRPKLSSALSLNPSPNDAVNEVLHKILSEPIRPHFAIVNLAVGFGASKILWLVTKTLGSDIPVIVSVTNGIMGRDALTGEFKEVKWDADALISAIVDEGIVLTVGYLPGLKVEAIPLQRPAKTPQEPWIDNFVMDIKEYSASVSSCQFTVGIMLFGEATSDMELLLKKLDYAMPMDTFIVGNERGSVVYRSGNDYRSICDNTKDIEAVALVFAQDKDRSSGSIRFHIAFSNGVSTVGARYKADSVQTNFDVCSTRLMARREGQQELLDGQSILLELKNSLPKLQQMENHIQRPEFLIRVIKHRKFSIGAEKPMPRKSIAYHGVLGVDEEYLYVDGIGIKKGDIFQFYHSDPNAALVSLTVVHDVLNNIKMGKNSRRFMGDGDNSINVFGGFIFACYGRGESFFGRHDVDSSPFLENFPGVPLGGIFCCGEIVRPCTPLIGQHQGAGPISFCLHTYGTVYLVMSYAPPSVEQ* 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4325 512 Pfam FIST C domain 362 473 IPR019494 -
Lja1g4325 512 SMART FIST_C_2 335 475 IPR019494 -
Lja1g4325 512 Pfam F-box domain 4 41 IPR001810 GO:0005515
Lja1g4325 512 SMART fbox_2 6 46 IPR001810 GO:0005515
Lja1g4325 512 PANTHER F-BOX ONLY PROTEIN 22 2 511 - -
Lja1g4325 512 PANTHER SKP2-LIKE, FIST C DOMAIN, FIST DOMAIN, N-TERMINAL ISOFORM 1 2 511 - -
Lja1g4325 512 SUPERFAMILY F-box domain 3 38 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4325 Lja-Chr1 55798364 55806008 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4325 - - gmx:100815778 705.671