Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4310 ATGAGAAGGCCATTGAAACAACAACCCAACAAGAAGCTCAAGCACAACCTCTTCGACGACCTCCCCGACGATCTCGTCGTCTTCATTCTCTCCAAGCTCTCCGCCACCGCTTCTTCTCCCTCCGATTTCATCAGCATCCTCTCCACATGCAAGAGACTCAACCAGTTAGGCCTCCACCGCCTGGTGTTATCCAAAGCCGGACCCAAAGTCTTCGCCGTCAACCCCAGAAACTGGTCGGAAAGCCCTCACCGCTTTCTCAAACACTGTGCCAACGCCGGTAACGTCGACGCCTGTTACACTCTCGGAATGATCCGATTTTACTGTCTGCAGAATCGGAGGAGCGGGCTCTCGTTAATGGCGAAGGCGGCGATGAAGCTGCACGCGCCGGCGTTGTACTCGCTGGCGGTGATTCAGTTTAATGGAAGTGGAGCCTCTAAGCGGGAGAAGGATCTACGCGCCGGCGTGGCGCTGTCGGCGCGGGCGTCGTTGCTAGGTCACGTCGACGCGCTCCGGGAGCTTGGGCATTGTCTCCAGGACGGTTACGGCGTGAAGATGAACGTTGCGGAGGGGCGGCGTTTGCTCGTGCAGGCGAACCTGCGGGAGCTTGCGTTGGTTTTACGCGCCGTGACGAGGGCGCCGTTGATGAGTGACTACGGCGTGGCGGTGCCGGAGGTGCATCCGGCGAATTGGTTTCTCAGGGAGTGGTTTGCGTCGGGGCGGGGAGAGCTAGGTGAGGGGCTGAGGATGTGCGGTCACATTGGGTGTGGCCGGCCGGAGACGCGGCCGCATGAGTTCCGGCGGTGCTCGGTTTGCGGGAAGGTGAATTACTGCTCGCGGGGGTGTCAGGCGCTGGATTGGAAGTTGCGGCACAAGATGGAGTGTGCGCCGGTGGAAGAGTGGGTTGAGGACGGTGGCGGTGACGGTGGTGCGGGCGTGGAAAATGAGGTAGTTGTGCAAAACGATGTCGTTTGA 972 0.5998 MRRPLKQQPNKKLKHNLFDDLPDDLVVFILSKLSATASSPSDFISILSTCKRLNQLGLHRLVLSKAGPKVFAVNPRNWSESPHRFLKHCANAGNVDACYTLGMIRFYCLQNRRSGLSLMAKAAMKLHAPALYSLAVIQFNGSGASKREKDLRAGVALSARASLLGHVDALRELGHCLQDGYGVKMNVAEGRRLLVQANLRELALVLRAVTRAPLMSDYGVAVPEVHPANWFLREWFASGRGELGEGLRMCGHIGCGRPETRPHEFRRCSVCGKVNYCSRGCQALDWKLRHKMECAPVEEWVEDGGGDGGAGVENEVVVQNDVV* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4310 323 SUPERFAMILY F-box domain 5 74 IPR036047 GO:0005515
Lja1g4310 323 PANTHER MYND DOMAIN-CONTAINING 7 317 IPR044508 -
Lja1g4310 323 Pfam MYND finger 255 294 IPR002893 -
Lja1g4310 323 Gene3D Tetratricopeptide repeat domain 69 212 IPR011990 GO:0005515
Lja1g4310 323 Gene3D - 243 298 - -
Lja1g4310 323 ProSiteProfiles Zinc finger MYND-type profile. 252 294 IPR002893 -
Lja1g4310 323 PANTHER HCP FAMILY PROTEIN WITH MYND-TYPE ZINC FINGER PROTEIN 7 317 - -
Lja1g4310 323 SUPERFAMILY HCP-like 84 197 - -
Lja1g4310 323 SUPERFAMILY HIT/MYND zinc finger-like 249 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4310 Lja-Chr1 55619974 55621882 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4310 - - gmx:100820040 492.271