Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4298 ATGCTTCACCACCCATTACTCTGCGGTTCCAGACCCGCCACTCACTCCACACTCTTCGCTTCGCTTTTCTCCGACGGCAACAACGCCGGTCGCAGTTCACTTGCCGGAAACTCGTTTTGCCGTGAAATCAGGTTGAAGTTCATGAAGCAAGCTTCGGGAAGCAAATCGAATCATAATGGTCGCGGAGTTTATAGTGAGACAACGGACCGCGCCAAGCTTAGGACAACTAATGTTTATAGTGGTCGTGCTCAGGAAGGGGTGCTTGAGGAAGATGTCTCCAAAGTGATAGAGAACAGACCAACATGGGAAATTTCCCCAGGACAGGCAGTTCCATTGGGTGTATCACAAGTTGACAATGGAATCAATTTTGCTATTTTTTCACAGCATGCAACTACAGTCACACTTTGTTTAGTCCTTCCTGAGAATGGAAGCATTGGTACTCTAGACGGTGGCATGATAGAACTGCCTTTGGATCCTTCCTTGAACAAAACAGGGGACGTTTGGCACATTTGTATTGAGGATCTTCCATGTAGCAAGGTTCTATATGGATATCGTATCGATGGAGCTCACGACTGGAGTAAAGGGCATCGGTTTGACAGCAGCATTGTGCTTGTTGATCCTTATGCAAAATTAATCGAAGGTCGAAGGAATTTTGGGGATATTAGCATGAGGTTGTCCAAGTTTCTCGGCACATATGATTTTGACAGTTTACCTTTTGAATGGGGGGAGAATTACAAGGTTCCAAATATTCCGGAGAAAGATCTTGTTATATATGAGATGAATGTCCGCGCATTTACAAGTGGTGAATCTAGTGGGTTGGATAACAGCATTCGTGGCAGCTATCTTGGTGTGATTGAGAAGATCCCACACTTGCTAGAGCTTGGTATCAATGCAGTGGAGTTGCTGCCTGTCTTTGAGTTTGATGAGTTTGAATTCCAGAGGCGTCCAAACCCCAGAGACCACATGATTAATACATGGGGTTATTCAACAATAAATTTCTTTGCTCCAATGAGTCGCTATGCTAGTGCTGGTGGAGGATCAGTTAATGCTTCCAAAGAGTTCAAGCAAATGGTTAAAGCCTTACATTCTGCTGGCATAGAGGTTATTTTGGATGTTGTCTACAATCATACTAATGAGGCTGATGATGCCAACCCTTACACTACTTCGTTCCGTGGCATAGATAATAAGGTTTATTACATGGTAGACGATAACGGGCAGTTGATGAACTTCTCTGGCTGTGGAAATACATTGAATTGTAACCATCCTGTGGTCATGGAGCTAATTCTCGACAGCCTAAGACACTGGGTCATTGAATATCATGTGGATGGATTTCGATTTGATCTTGCAAGTGTCCTATGTCGAGGAGTAGATGGCTCCCCCCTTAATGCTCCCCCACTTATTAGGGCAATTGCTAAAGATGCAGTTTTGTCAAGGTGTAAAATTATTGCAGAGCCTTGGGACTGTGGAGGTCTCTATCTTGTTGGAAGTTTTCCCAATTGGGATCGGTGGGCTGAATGGAATGGGAAATATCGCGATGATGTGCGGAAATTTATCAAGGGCGATTCTGGTATGAAGGGGGGCTTTGCGACTCGTGTTTCTGGGTCTTCTGATCTTTACAGAGTGAACAAGCGTAGACCATATCATGGTATTAACTTTGTTATTGCACATGATGGGTTCAGCTTGCGTGATCTTGTTTCATACAATTTCAAGCACAATGAGGCCAATGGGGAAGGTGGACAAGATGGAAGCAATGATAATTTTAGCTGGAATTGTGGTTTTGAAGGAGAAACTGATGATGCTAGTATAAGAGCTTTGCGGTCAAGACAAATGAAAAACTTCCATTTGGCATTAATGATATCTCAGGGCACACCGATGATGTTAATGGGGGATGAATACGGCCATACTCGCTATGGAAATAACAATAGTTACGGGCATGATACTTCCCTTAATAATTTCCTGTGGGATCAGTTGGATACACGTAGGAGTGATCACTTCAGGTTTTTCTCTAAGGTGATAAAGTACCGGCTTGCACATCAAATATTGAAGCATGAAAATTTTCTCAGCAAGAATGACATAACATGGCATGAAGATAACTGGGACAATCCTGACAGCAAGTTTCTAGCATTTACGCTTCATGACAGAAGTGGAGGAGATATCTATTTGGCATTTAACGCTCATGACTACTTTGTGAAAGCTCCGCTGCCCACACCTCCAACAAAAAGGTGGCATCGTGTGGTGGACACTAATCTCAAATCTCCAGATGACTTTGTCCTTGATGGTGTCCCTATCGAAGGAAACATGTATAGTATAGCTCCATACTCCTCCATTCTTCTTGAGGCGAAGTTTTGA 2349 0.4347 MLHHPLLCGSRPATHSTLFASLFSDGNNAGRSSLAGNSFCREIRLKFMKQASGSKSNHNGRGVYSETTDRAKLRTTNVYSGRAQEGVLEEDVSKVIENRPTWEISPGQAVPLGVSQVDNGINFAIFSQHATTVTLCLVLPENGSIGTLDGGMIELPLDPSLNKTGDVWHICIEDLPCSKVLYGYRIDGAHDWSKGHRFDSSIVLVDPYAKLIEGRRNFGDISMRLSKFLGTYDFDSLPFEWGENYKVPNIPEKDLVIYEMNVRAFTSGESSGLDNSIRGSYLGVIEKIPHLLELGINAVELLPVFEFDEFEFQRRPNPRDHMINTWGYSTINFFAPMSRYASAGGGSVNASKEFKQMVKALHSAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDDNGQLMNFSGCGNTLNCNHPVVMELILDSLRHWVIEYHVDGFRFDLASVLCRGVDGSPLNAPPLIRAIAKDAVLSRCKIIAEPWDCGGLYLVGSFPNWDRWAEWNGKYRDDVRKFIKGDSGMKGGFATRVSGSSDLYRVNKRRPYHGINFVIAHDGFSLRDLVSYNFKHNEANGEGGQDGSNDNFSWNCGFEGETDDASIRALRSRQMKNFHLALMISQGTPMMLMGDEYGHTRYGNNNSYGHDTSLNNFLWDQLDTRRSDHFRFFSKVIKYRLAHQILKHENFLSKNDITWHEDNWDNPDSKFLAFTLHDRSGGDIYLAFNAHDYFVKAPLPTPPTKRWHRVVDTNLKSPDDFVLDGVPIEGNMYSIAPYSSILLEAKF* 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4298 782 CDD AmyAc_Glg_debranch 239 678 - -
Lja1g4298 782 Gene3D - 690 782 IPR013780 -
Lja1g4298 782 CDD E_set_GDE_Isoamylase_N 111 259 IPR044505 -
Lja1g4298 782 Gene3D Glycosidases 235 689 - -
Lja1g4298 782 Pfam Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 111 209 IPR004193 GO:0004553|GO:0005975
Lja1g4298 782 SUPERFAMILY E set domains 106 223 IPR014756 -
Lja1g4298 782 Pfam Alpha amylase, catalytic domain 280 397 IPR006047 GO:0005975
Lja1g4298 782 Gene3D Immunoglobulins 93 228 IPR013783 -
Lja1g4298 782 SMART aamy 259 661 IPR006047 GO:0005975
Lja1g4298 782 SUPERFAMILY (Trans)glycosidases 238 681 IPR017853 -
Lja1g4298 782 PANTHER GLYCOGEN DEBRANCHING ENZYME 92 780 - -
Lja1g4298 782 SUPERFAMILY Glycosyl hydrolase domain 689 781 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4298 Lja-Chr1 55339991 55357539 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4298 10 781 Glycoside Hydrolase AT4G09020 72.036 0.0 1160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4298 K01214 - gmx:100807545 1410.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4298 1 55339991 55357539 Lja1g4298 1 55339991 55357539 ECH