Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4295 ATGGCATTCTCAAATGCTCTGGTTTTGGGCTTATTTGTAGCAATCAACATGGTCCTGCCAACACTTGCAACTGTATACAGTGTGGGAGATACTTCAGGTTGGGCAGCTGGTGCTGATTATAGCACATGGACTAGTGACAAGACCTTTGCAGTTGGTGATAGCCTTGTGTTCAACTATGGAGCTGGACACACTGTGGATGAAGTTAAAGAGAGTGACTACAAATCCTGCACCACAGGAAATTCACTGAGCACAGACAGTAGTGGGAAAACCACCATTGCCCTCAAGACTGCAGGCACTCATTACTTCATATGTTCTGTTCCTGGACATTGTTCAGGTGGCATGAAACTTGCAGTTACTGTCAAAGGCGCTGCTTCTTCTACAACACCATCATCTGGGAAGGGTTCACCTTCAACCACCACAGGCACACCCACCTCCACCACCACCACCCCCACCGCCAAAACAGATTCATCTTCAGGGGATAGTCTCTCACCATTTGTTGCTATGTTGATTGTTTCATGGATCTTCTACTATGCTTTGCCTCTGGTATGA 549 0.4681 MAFSNALVLGLFVAINMVLPTLATVYSVGDTSGWAAGADYSTWTSDKTFAVGDSLVFNYGAGHTVDEVKESDYKSCTTGNSLSTDSSGKTTIALKTAGTHYFICSVPGHCSGGMKLAVTVKGAASSTTPSSGKGSPSTTTGTPTSTTTTPTAKTDSSSGDSLSPFVAMLIVSWIFYYALPLV* 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4295 182 SUPERFAMILY Cupredoxins 23 120 IPR008972 -
Lja1g4295 182 MobiDBLite consensus disorder prediction 125 160 - -
Lja1g4295 182 PANTHER BLUE COPPER PROTEIN 7 171 IPR039391 GO:0009055
Lja1g4295 182 Pfam Plastocyanin-like domain 34 114 IPR003245 GO:0009055
Lja1g4295 182 ProSiteProfiles Phytocyanin domain profile. 24 122 IPR003245 GO:0009055
Lja1g4295 182 CDD Phytocyanin 24 120 - -
Lja1g4295 182 ProSitePatterns Type-1 copper (blue) proteins signature. 98 114 IPR028871 -
Lja1g4295 182 Gene3D - 22 127 IPR008972 -
Lja1g4295 182 PANTHER BLUE COPPER PROTEIN-LIKE 7 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4295 Lja-Chr1 55307948 55309410 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4295 8 181 Miscellaneous Gene Families AT1G22480 46.927 1.45e-38 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4295 - - gmx:100306522 239.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4295 1 55307948 55309410 Lja1g4295 1 55307948 55309410 ECH