Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4288 ATGACCAGGTTCAAGATACTCGCCGACAATCTCAAAGACAAAGCCTCAGTTCTCGCCGCAGCACTCTCAATCAAGCGCCAAGTATCCTCCGTCAAGGTCCGCGTCCTCCGCGCCACCACCCACAACCTCTCCGCCCCTCCCTCGGAAGACACAATCGCTGCCGTTCTCGCCGCCGGCAGAGGCTCCTACCTTCTCCCCCGCGCCTGCATCGACGCCCTCATGGACCGCCTCCACCGCACCCGCAGCGCCGCGGTTGCCCTCAAATGCCTCTTCACGCTTCACAACGTCGTCGTCAAAGGGTCGTTCGCGCTCAAGGACACGCTCTCCTGCTACCCTTCCTACGGCGGCCGGAACTTCCTCAACCTCTCGGATTTCCGCGATGATACCGACTTCGAATCGATTGAACTCAGCTCCTGGGTTCGGTGGTACGCGAGTGTCGTAGAACAGAGCTTAACCGTTTCTAGAGTCATGGGGTATTACCTTACCGCTTCAAATTCTTCAATGGACAAAAAGAAAGATACCCAAGAATTGGAATCTTTGGTTTTGAAGATGTCAAACGCTGATTTGTTGTACAAGTTGGAAAATCTGGTGGTTTTCGTTGAACAAATTGGTCGTGTTCCTGAGTCATTGCACCTTCAGAGGAACGAGTTGGTCTACGAAGTTGTGAGATTGGTGGGGGAAGATTACAGAAGCGTGCAGGGTGAGATTTTGTGGCGGTTGGAGGAGCTTGAGAATCGGGTTACAGAGGACATGGATGTGGGTGAGTTGAGCGAGTTGGTGGGTTATTTGAATCGGTTGGAAGAAACGCAAGAAAGATTGGTGCTGTTGTTTGTGAACAGAAGAAGGAATAATGGGTTGTGGGATTTGATCAAGAAGACGAAGGTGAAGGCGTTGGAGAAGAAGGAGGAGACGGAGGGGAAGTGGCTCACGGTGGTGGTGTCCAAGAATGCGGCCAGCGCCGCCGCCGCCGAGTTGACTCGGTCTACGAACCCGTTTCTTGAACCGGGTCAAGTGTGTCCGGTTCTGCCGTTGGGTTTTGCAACGGTTAGATGA 1053 0.5347 MTRFKILADNLKDKASVLAAALSIKRQVSSVKVRVLRATTHNLSAPPSEDTIAAVLAAGRGSYLLPRACIDALMDRLHRTRSAAVALKCLFTLHNVVVKGSFALKDTLSCYPSYGGRNFLNLSDFRDDTDFESIELSSWVRWYASVVEQSLTVSRVMGYYLTASNSSMDKKKDTQELESLVLKMSNADLLYKLENLVVFVEQIGRVPESLHLQRNELVYEVVRLVGEDYRSVQGEILWRLEELENRVTEDMDVGELSELVGYLNRLEETQERLVLLFVNRRRNNGLWDLIKKTKVKALEKKEETEGKWLTVVVSKNAASAAAAELTRSTNPFLEPGQVCPVLPLGFATVR* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4288 350 Pfam ANTH domain 32 275 IPR011417 GO:0005543
Lja1g4288 350 CDD ANTH_N_AP180_plant 32 154 - -
Lja1g4288 350 SMART enth_2 29 161 IPR013809 -
Lja1g4288 350 PANTHER CLATHRIN ASSEMBLY PROTEIN 3 340 IPR045192 GO:0048268|GO:0072583
Lja1g4288 350 ProSiteProfiles ENTH domain profile. 23 161 IPR013809 -
Lja1g4288 350 SUPERFAMILY ENTH/VHS domain 31 158 IPR008942 -
Lja1g4288 350 Gene3D - 2 160 IPR008942 -
Lja1g4288 350 PANTHER CLATHRIN ASSEMBLY PROTEIN 3 340 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4288 Lja-Chr1 55222432 55223871 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4288 - - gmx:100788852 452.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4288 1 55222432 55223871 Lja1g4288 1 55222432 55223871 ECH