LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja1g4287	ATGACTACAAGATATCCAGCATCACCAAAGTCTGTCAGCACACTAGTAATGGCGAATGAAGAAAACCATCCACTGATACAGTCAACGCTGCGACCACAAGAACCGACTTCAAAGTCAACCACTCAGCTGCACTCTCTAATCGAACGAACATGTTCAGAATCAAAGAAGCTATGGAACATTGCTGGCCCTTCCATCTTCAGCCGCCTCGCCATGTTCTCCATCACCGTCGTCACTCAGTCATTCTCCGGCCACCTCAGCGACCTCGACCTCGCCGCCATTTCCATCTCCTGCACCCTCCTCATCTCCATCACTTTCGGTTTCTTGCTCGGAATGGCGACGGCGCTTGAGACCCTTTGCGGCCAAGCTTACGGCGCGGGACAGCACCACATGCTAGGCGTGTATCTGCAGCGTTCGTGGGTTGTTCTGTTTCTGTCTTCGATTCTTCTGCTGCCATTGTTTGTGTTTGCTACTCCTCTGTTGGTGCTCATCGGACAGCCGCCGGAGGTGGCGGAGCGAGCGGGTTTGGTGGCGATTTGGTTGATCCCGTTTCACCTGAGCTTCCCGTTTCAGTTCACTTTGCAGAGATTCTTGCAGTGCCAGTTGAAGACTGCGATTGTTGCTTGGGTTTCAGGGGGTGCTTTTGTGATTCATGTGATTTTGAGCTGGGTTTTTGTTTACAAGATGAGGATTGGGATTGTTGGGGCTGCGCTTACTATTGGTTTCTCGTGGTGGCTCTCGGTTTTGGGGATGCTTGGGTATACACTGTATGGTGGGTGTCCATGTTCTTGGACTGGTTTTTCTGATCAAGCTTTTGTTGGTCTCTGGGATTTCTTCAAGCTCTCTCTGGCTTCTGGGGTCATGCTTGCGTTAGAGAACTTCTATTATAGGCTTTTGCTTTTGGTGTCTGGTTTTATGGATAACTCTAAGATTGCTATTGATGCTCTTTCTGTCTGTGTTACTATTTATGGTTGGGAATCTATGATACCGCTTGGATTTTTGGCTGCAACCGGGGTGCGTGTATCAAATGAGCTTGGCGCAGGCAATGCAAAAGGGGCAAAATTTGCCACTGTGGTTTCAGTGGTAAACACTGTACTAGTGGGATTTATATTTTGGTTGATAATTATGGCCTTCAATGAGAAGCTTGCTTTGATCTTTACATCAAGCTCATCTGTAATCCAAATGGTCAATGAACTTGCAATCTTGTTGGCTTTTACCATTCTTCTTAATTGCATTCAACCAGTTCTTTCAGGTGTAGCAGTTGGATCTGGTCAGCAAGCAGTGGTAGCTTATATAAACATTGGTAGTTACTACTTGGTTGGAATACCTCTTGGGCTTCTCCTTGGATGGTTGCTACCTTCGGCTATTGTGGGTATGTGGACTGGAATGATGAGTGGAACGGTGGTTCAAACATTGATCTTGGCTATAATTACGATGAGATATGATTGGGAAAGAGAGGTACTGAAAGCCCAGATTCTTTCAGAACTCAGAACGACGGGTAAAGCCACCATGGGTAGCGTGAAGAGAGAGAATGAAGAAGAAGAAGATGGCACCAATGATCTTATCCAATCCCTCTTGGCCAATCCTCATGCACAAGACCAACCTTTTCAGGATCAGGATCAACAACGATTCAGCAACAAGCTCTGGATTGAAACCAAGAACCTATGGATCATCGTTGGCCCCTCCATCTTCAGCCGCCTCGCCTCATTCACCATGAACGTCGTCACTCAAGCCTTCGCCGGCCACCTCGGCGACGTCCAACTCGCCGCCATCTCCATCGCGAACACCGTCATCGTTGGCTTTAATTTCGGCCTCCTATTGGGGATGGCAAGTGCGTTGGAGACGCTGTGCGGTCAAGCGTTTGGTGCGAAGAGGTATCACATGCTGGGGATTTACATGCAGAGGTCATGGATTGTTCTGTTTCTGTGCTGTTTCCTGTTGCTTCCGTTTTACGTTTTTGCAACTCCGATTCTGAAGCTTCTGGGGCAGCCAGATGAGGTTGCGGAGTGGAGTGGTGTGGTGGCGGTGTGGCTGATTCCTCTGCATTTCAGTTTCGCGTTTCAGTTCCCTCTGCAGAGGTTTCTCCAGTGCCAGCTGAAGACTGCTGTGATTGCTTGGGTTTCGTTGCTGGGTTTGGTGGTTAATGTTTTCACTAGCTGGCTCTTGATTTATGTGTTGGATTTTGGGCTTCTTGGTGCTGCTATTGCTCTGGATGTTTCTTGGTGGGTTCTGGTTTTTGGAATGTTTGCTTATGCTGCTTATGGTGGGTGTCCTTTGACATGGGGTGGTTTTTCCATGGAAGCTTTTAGTGGACTATGGGAGTTTCTCAAACTCTCTTTTGCTTCTGGGGTCATGCTCTGCTTAGAGAACTGGTACTACAGGATACTGTTACTCATGACAGGGAAGTTGAAGAATGCTACTGTTGCTGTTGATGCCTTGTCGGTGTGCATGACTATCAATGGATGGGAAATGATGATCCCACTGGCTTTCTTCGCGGGTACTGGGGTGAGGGTGGCGAATGAGCTAGGCGCAGGAAATGGGAAATCAGCAAAATTTGCAATGCAAGTATCAGTGGTGCAATCAACAGTGATTGGTGTCGTTTTCTGCGTTCTGATAATGATATTCCATGACCAATTTGCTTACATATTCACCTCCAGCTCTTCTGTGCTTCAAGCAGTTGACGGCATGTCGTACCTCTTAGCGGTCACCATTCTTCTCAACAGTGTTCAGCCTGTTTTGTCAGGAGTGGCAGTTGGTTCTGGATGGCAAGCATTTGTAGCATACATAAACATAGGGTGCTACTACCTCATTGGGCTTCCACTTGGAATTCTTATGGGATGGGTCTTCGACACTGGCGTTGCTGGCATCTGGGGTGGGATGATATTTGGTGGCACAGCAATACAAACGGTGATACTGATCATAGTCACATTACGATGTGATTGGGATAAAGAGGCTATGAAAGCTAGCTCACGTGTAGAGAAGTGGTCAACCCCTGACCCAATTGACCAGAATGAGAACTCCACCTAA	3024	0.4769	MTTRYPASPKSVSTLVMANEENHPLIQSTLRPQEPTSKSTTQLHSLIERTCSESKKLWNIAGPSIFSRLAMFSITVVTQSFSGHLSDLDLAAISISCTLLISITFGFLLGMATALETLCGQAYGAGQHHMLGVYLQRSWVVLFLSSILLLPLFVFATPLLVLIGQPPEVAERAGLVAIWLIPFHLSFPFQFTLQRFLQCQLKTAIVAWVSGGAFVIHVILSWVFVYKMRIGIVGAALTIGFSWWLSVLGMLGYTLYGGCPCSWTGFSDQAFVGLWDFFKLSLASGVMLALENFYYRLLLLVSGFMDNSKIAIDALSVCVTIYGWESMIPLGFLAATGVRVSNELGAGNAKGAKFATVVSVVNTVLVGFIFWLIIMAFNEKLALIFTSSSSVIQMVNELAILLAFTILLNCIQPVLSGVAVGSGQQAVVAYINIGSYYLVGIPLGLLLGWLLPSAIVGMWTGMMSGTVVQTLILAIITMRYDWEREVLKAQILSELRTTGKATMGSVKRENEEEEDGTNDLIQSLLANPHAQDQPFQDQDQQRFSNKLWIETKNLWIIVGPSIFSRLASFTMNVVTQAFAGHLGDVQLAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKRYHMLGIYMQRSWIVLFLCCFLLLPFYVFATPILKLLGQPDEVAEWSGVVAVWLIPLHFSFAFQFPLQRFLQCQLKTAVIAWVSLLGLVVNVFTSWLLIYVLDFGLLGAAIALDVSWWVLVFGMFAYAAYGGCPLTWGGFSMEAFSGLWEFLKLSFASGVMLCLENWYYRILLLMTGKLKNATVAVDALSVCMTINGWEMMIPLAFFAGTGVRVANELGAGNGKSAKFAMQVSVVQSTVIGVVFCVLIMIFHDQFAYIFTSSSSVLQAVDGMSYLLAVTILLNSVQPVLSGVAVGSGWQAFVAYINIGCYYLIGLPLGILMGWVFDTGVAGIWGGMIFGGTAIQTVILIIVTLRCDWDKEAMKASSRVEKWSTPDPIDQNENST*	1008

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja1g4287	1007	TIGRFAM	matE: MATE efflux family protein	560	956	IPR002528	GO:0015297\|GO:0016020\|GO:0042910\|GO:0055085
	Lja1g4287	1007	TIGRFAM	matE: MATE efflux family protein	63	459	IPR002528	GO:0015297\|GO:0016020\|GO:0042910\|GO:0055085
	Lja1g4287	1007	PANTHER	MULTIDRUG RESISTANCE PROTEIN	36	489	-	-
	Lja1g4287	1007	Pfam	MatE	285	445	IPR002528	GO:0015297\|GO:0016020\|GO:0042910\|GO:0055085
	Lja1g4287	1007	Pfam	MatE	782	942	IPR002528	GO:0015297\|GO:0016020\|GO:0042910\|GO:0055085
	Lja1g4287	1007	Pfam	MatE	560	720	IPR002528	GO:0015297\|GO:0016020\|GO:0042910\|GO:0055085
	Lja1g4287	1007	Pfam	MatE	63	223	IPR002528	GO:0015297\|GO:0016020\|GO:0042910\|GO:0055085
	Lja1g4287	1007	CDD	MATE_eukaryotic	550	984	IPR045069	GO:0042910\|GO:1990961
	Lja1g4287	1007	PANTHER	PROTEIN DETOXIFICATION	36	489	-	-
	Lja1g4287	1007	PANTHER	PROTEIN DETOXIFICATION	530	986	-	-
	Lja1g4287	1007	CDD	MATE_eukaryotic	53	488	IPR045069	GO:0042910\|GO:1990961
	Lja1g4287	1007	PANTHER	MULTIDRUG RESISTANCE PROTEIN	530	986	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja1g4287	Lja-Chr1	55189937	55219786	Dispersed/Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lja1g4287	K03327		-	gmx:100500204	823.928

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja1g4287	1	55189937	55219786	Lja1g4287	1	55189937	55219786	ECH