Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4283 ATGGCGGCGAACCGCGCTCTCTCCGCCGCAATCAGACGCATAAGCTCTGTAATCAGCGCACGAACTCTATGGAGCTCCGCAGATTCTGGCGGTTCAGCATTCGCACACAACAACCACGACCTGAAGAACCTGATATCGAAGCTCAGATCACCCAATCGGAGTCCATTAACGGCGCTTCAGAATTGGATCGACCAAGGCAACGTGGTTCCACCCTCCGAGCTCAGACGCATCTCCAGAACGTTCCTCAAATCCAAGCGCTACCACCACGCACTTGAGATATTGAAATGGATGGAAAACCAAAAGAATTTGCGAACGATCCCGGATGATCATGCCATGAAATTGGAGTTGATTATTGAAACATATGGTATAACGGAAGCTGAAGAATATTTTAGAAATCTACCTGACTCAGCTGCGAAGAAAGCGGCCTGTCTCCCGCTTTTGCGAGGCTATGTAAGAGATAGGGACAGCAGGAAAGCTGAGACTTTCATGGTGAAGCTCTATGAACTGGGGCTAGTGGTGAGCCCTCACCTGTATAATGAGATGATGAAACTTTATATTGCCACATGTGAGTACAGGAAGGTACCCCTTGTTATCCAGCAAATGAGACGAAATAAAGTACGCTGTAATGTTCTGTCCTACAACCTTTGGATGAGTGCTTGTGGTGAGGGAGAAGGATATGGGGTTGCAGCAGTAGAGAGAGTTTTTAGTGTGATGCAAAATGATGAGAATGTTGAGGTGGGATGGAGCAGTCTTGCTACTTTAGCCAATGTTTATGTGAAAGCAGGACAATCTGATAAGGCTATTCAAGTTCTAAAAAATGCTGAGACGAAACTATCTACCTTTGGCCGTCTTGGTTACTTCTTCCTTATGACAATATATGCCTCTTTGAAGGAAAAGGAGGGAGTCTTGCGGTTATGGGATGCTAGTAAAGCAGTTGCTGGAAGAATCAGTTGTGCCAACTACATTTGCATACTTACATGCTTGGTGAAGCTTGAGGATATAGTACAAGCTAAGAGAATCTTCATGGAATGGGAGTCTAATTGCCGGAAGTACGATATCAGAATCTCTAATATTCTTTTGGGTGCATATGTGCGGAATGGATTAATGGAAGAAGCTGAGTCACTGCATCTCCACACATTACAGAAGGGTGGTTGTCCAAACTACAAAACATGGGAGATTCTCATTGAAGGATATCTCAATACACAAAGAATGGATGAGGCTATTATTTCCATGAAGAGAGCTTTAGCTATGTTGAAAGACTGTCATTGGAGGCCGCCGCATAGGCATGTATTGGCCATAGCAGAGTATTTGGAGAAACATGGGAATTTTGAATATGCAAACGAGTTTATTACAGATATTCATAATTTAGGTCTTGGGAGTGTGTCATTGTATAAAATATTGCTTAGAATGCACCTTTCTGCTAACAAACCACCTTTCCATATCCTTAAAATGATGGATGAAGATAAAGTCGAGATGGATAATGAGACCCTTTCCATCATTAAAGCCTTCACTGGGCTGAAGTGCAAGGAGGTGTAG 1536 0.4355 MAANRALSAAIRRISSVISARTLWSSADSGGSAFAHNNHDLKNLISKLRSPNRSPLTALQNWIDQGNVVPPSELRRISRTFLKSKRYHHALEILKWMENQKNLRTIPDDHAMKLELIIETYGITEAEEYFRNLPDSAAKKAACLPLLRGYVRDRDSRKAETFMVKLYELGLVVSPHLYNEMMKLYIATCEYRKVPLVIQQMRRNKVRCNVLSYNLWMSACGEGEGYGVAAVERVFSVMQNDENVEVGWSSLATLANVYVKAGQSDKAIQVLKNAETKLSTFGRLGYFFLMTIYASLKEKEGVLRLWDASKAVAGRISCANYICILTCLVKLEDIVQAKRIFMEWESNCRKYDIRISNILLGAYVRNGLMEEAESLHLHTLQKGGCPNYKTWEILIEGYLNTQRMDEAIISMKRALAMLKDCHWRPPHRHVLAIAEYLEKHGNFEYANEFITDIHNLGLGSVSLYKILLRMHLSANKPPFHILKMMDEDKVEMDNETLSIIKAFTGLKCKEV* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4283 511 PANTHER OS02G0796400 PROTEIN 10 503 - -
Lja1g4283 511 Gene3D Tetratricopeptide repeat domain 285 510 IPR011990 GO:0005515
Lja1g4283 511 Gene3D Tetratricopeptide repeat domain 73 281 IPR011990 GO:0005515
Lja1g4283 511 SUPERFAMILY TPR-like 250 446 IPR011990 GO:0005515
Lja1g4283 511 Pfam Pentatricopeptide repeat domain 176 222 IPR002885 -
Lja1g4283 511 PANTHER OS12G0527900 PROTEIN 10 503 - -
Lja1g4283 511 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 352 386 IPR002885 -
Lja1g4283 511 Pfam PPR repeat 253 272 IPR002885 -
Lja1g4283 511 Pfam PPR repeat 357 376 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4283 Lja-Chr1 55134704 55143706 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4283 45 425 EF-hand Containing Proteins AT1G02150 32.723 2.13e-72 237
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4283 - - gsj:114409242 771.155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4283 1 55134704 55143706 Lja1g4283 1 55134704 55143706 ECH