Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4258 ATGGATATGGACGAGAGACAAGTGATGATGCGCGACATCGGTTTACAAATCTTCATGATTTTCCTCTTCATCTTCGTCTTCCTCGGCATCTACGGCATCCCACAGCGGCTATTCGCCAAGCTCCGATTCCAAAACCGAGCCAGCGTCGACGCCAAGCGCCACTTCGTCAAAGGCGCTCAGCTCCTCGCACAAGCCAGATCCTCCAACGCCCGAACCAGATCCGCCACCACCTCCCTCGCTAAAGAAGCCTTAGCCGAAGCCGAGAAAGCCATCGCGCTCGATCCGAAAGACGCCGCGGCTTACCTTCTCAAAGCGATGGTTCTCGATCTACAGGGATTCAGAACCTCCGCTTTGGAATCGCTTGATGCGGCGCTCTCACCGCTCGCCGCCGGATCGCTAGCTAGCGGCGAGCGGGGAGATGCGCTGCTTAAGAGAGGCGAGTTGAAACTCGCGACGAGTCAGCGCGGGAAGGTTGACCCGGCGCTGGCGGATTTGACCGAGTCGGTGAAACTCAGTCCGAGGAACGTGAAGGCTTGGAGTTTGTTAGGGGAGTGCTATGAAGGGAAGAAGATGGAGGAGGAGGCGAAGAAGGCGTACCAGGAGGCGTTGCAGTTGGAGCCGGAGCTTTCTGCTGCTCAGGAAGCGCTCAAACGGTTGAGTTCTGCTTCTTCATAG 675 0.5719 MDMDERQVMMRDIGLQIFMIFLFIFVFLGIYGIPQRLFAKLRFQNRASVDAKRHFVKGAQLLAQARSSNARTRSATTSLAKEALAEAEKAIALDPKDAAAYLLKAMVLDLQGFRTSALESLDAALSPLAAGSLASGERGDALLKRGELKLATSQRGKVDPALADLTESVKLSPRNVKAWSLLGECYEGKKMEEEAKKAYQEALQLEPELSAAQEALKRLSSASS* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4258 224 Gene3D Tetratricopeptide repeat domain 153 224 IPR011990 GO:0005515
Lja1g4258 224 Pfam Tetratricopeptide repeat 176 208 IPR001440 GO:0005515
Lja1g4258 224 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 11 219 - -
Lja1g4258 224 Gene3D Tetratricopeptide repeat domain 53 152 IPR011990 GO:0005515
Lja1g4258 224 SUPERFAMILY TPR-like 82 216 IPR011990 GO:0005515
Lja1g4258 224 SMART tpr_5 139 175 IPR019734 GO:0005515
Lja1g4258 224 SMART tpr_5 176 209 IPR019734 GO:0005515
Lja1g4258 224 ProSiteProfiles TPR repeat profile. 176 209 IPR019734 GO:0005515
Lja1g4258 224 PANTHER - 11 219 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4258 - - gmx:100783725 231.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4258 1 54602420 54603624 Lja1g4258 1 54602420 54603624 ECH