Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4256 ATGGCGGCCACTAACGAAGATTTCAAAGGTGTCTCGAATTGTTATGTGTTCAAGAGCCGATTGCAGGAGTATGCTCAGAAAGTGGGGCTCACCACACCTGTCTATGAAACAATCAAGGAAGGGCCTTCCCATGAGCCTTATTTCAGGTCAACTGTGATAGTAAACAATGTTCGGTATGATTCTTTGCCTGGATTTTTCAACCGTAAAGCAGCAGAGCAGTCTGCTGCTGAAGTTGCTCTGGTGGAGTTGGCCAAATCTGCTGAAGCTAATCAACCCGTCAGTCAACCTGTTCATGAAACTGGATTATGCAAGAATTTACTTCAGGAATATGCACAGAAGATGAGTTATGCAATGCCTTTGTATAACTGCAAAAAGGAAGAGACGCCAGGTCGGGCAGCTGGATATTCATGTACTATTGACATTGGGGGGATTCTCTATATTGGGGGAACAGCAAAAACGAAGAGGGAAGCAGAGTTAAAAGCAGCTAGAACTGCTCTGTTAGCTATCCAGTCAAGTCCATCTCATGCTACTGAAAACCAGTTGACAGTCATTCCTTGCAGAAAAAGGGCAACAACTGTTCCCTTGCCTGATAAGACTTCAAAAACCCCCAAGCCAAAGAAAGAACGGTTTAAAAGGAAATCTGCCAAGAGGAAACAGTATAGAGATAAGAAGGGCCGCATTCGTGCTGAAAATGTGGGTAGTGGAGCAGAAATCAACCATCAGGTAGAAGCACATGCAAGTGTTAATGATGAACCTGGCATCCAGCAAATGAATTCTGAAGCATTCACATCAGAAGTAATGAAGGATTCTGAGATTGGAATGTCAGTTAATTATCATGAGAAAGAGACATTTGCTGGGGAGGGTGCTATTGCTCTTAATGGCCAAGAGACATTTGAAAATGGGAAGTCACAAGAAATGCATTGCAAAGAGAACAATCATGAGACTGTTGCTATTGAACAGTCTTCAGTGCCTAATGCAGGAATCCTAGAAAGGTGCACACTCATGGAGATGAACAAACAGCAATATGATGGAGAAATGATGCCAGACAATAAACTGTAA 1059 0.4287 MAATNEDFKGVSNCYVFKSRLQEYAQKVGLTTPVYETIKEGPSHEPYFRSTVIVNNVRYDSLPGFFNRKAAEQSAAEVALVELAKSAEANQPVSQPVHETGLCKNLLQEYAQKMSYAMPLYNCKKEETPGRAAGYSCTIDIGGILYIGGTAKTKREAELKAARTALLAIQSSPSHATENQLTVIPCRKRATTVPLPDKTSKTPKPKKERFKRKSAKRKQYRDKKGRIRAENVGSGAEINHQVEAHASVNDEPGIQQMNSEAFTSEVMKDSEIGMSVNYHEKETFAGEGAIALNGQETFENGKSQEMHCKENNHETVAIEQSSVPNAGILERCTLMEMNKQQYDGEMMPDNKL* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4256 352 CDD DSRM_AtDRB-like_rpt1 16 84 IPR044450 GO:0003725
Lja1g4256 352 Pfam Double-stranded RNA binding motif 18 80 IPR014720 -
Lja1g4256 352 Pfam Double-stranded RNA binding motif 104 167 IPR014720 -
Lja1g4256 352 SUPERFAMILY dsRNA-binding domain-like 104 173 - -
Lja1g4256 352 MobiDBLite consensus disorder prediction 205 223 - -
Lja1g4256 352 MobiDBLite consensus disorder prediction 191 225 - -
Lja1g4256 352 Gene3D - 17 98 - -
Lja1g4256 352 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 102 171 IPR014720 -
Lja1g4256 352 PANTHER RIBONUCLEASE III 1 311 IPR011907 GO:0003723|GO:0004525|GO:0006364
Lja1g4256 352 PANTHER DOUBLE-STRANDED RNA-BINDING PROTEIN 1 1 311 IPR031147 GO:0003725
Lja1g4256 352 SUPERFAMILY dsRNA-binding domain-like 13 85 - -
Lja1g4256 352 SMART DRBM_3 103 170 IPR014720 -
Lja1g4256 352 SMART DRBM_3 17 84 IPR014720 -
Lja1g4256 352 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 16 85 IPR014720 -
Lja1g4256 352 Gene3D - 99 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4256 Lja-Chr1 54578726 54582068 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4256 - - gmx:100782651 486.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4256 1 54578726 54582068 Lja1g4256 1 54578726 54582068 ECH