Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4249 ATGATGTCGCTAGGTTCTCTGTCGTCAACCTTCACTCTAGCGCCACCGTTCACTCGCCACCACCGCCACCACTCCTCCGCCGGCAGCAGAACTTCCTCATTCCCCACTCGCGCGAGAATCGAAAACGTCAGAATGGAACCCCGAGAGGTGCCAAACCCCAAGCCCAAGGAGGAGAAACTGTGGGGTGGAAGGTTCAAGGAAGGAGTAACCGACGTCGTTGAGCGCTTCACCGAGTCGATCTCCTTCGATAAGGAGCTTTACAAGCAGGACATCACTGGAAGCAGAGCGCATGCTTCAATGCTCGCTCATCAGGGATTGATTACGGCAAGTGATAGGGATTCTATTCTGCAAGGTTTGGATGAGATTGAGAGGCGGATTGAAAACGGCGAGTTCAATTGGAGGACTGATAGGGAGGATGTGCACATGAACATTGAAGCTGCGCTCACTGACATGATTGGCGAGCCTGCTAAGAAGCTTCACACCTCTCGGAGCCGGAATGATCAGGTTGTGACGGACTTGCGCCTCTACTGCCGTGATGCCATTGATGAGATTCTTGCAAGCATGAAGCGACTTCAAGTGTCACTGATGACCCTAGCTTTGGACAATCAGGGCCTTATTGTTCCTGGTTATACTCATCTGCAGCGCGCACAGCCTGTTCTGCTCCAGCATCTTCTGCTAGCTTATGTTGAGGAGATTGAGCGTGATGCTGGTCGTTTGATAGATTGTAGAGCTAGGATGAATTTCTGCCCCTTAGGGGCTTGTGCATTGGCTGGTACAGGGCTACCCATTGATCGATTCATGACTTCAGATGCCTTAGGATTTACAGCTCCCATGAGAAATAGTATAGATGCAGTATCAGACAGAGATTTTATACTGGAGTTTCTTTCTGCTAATGCCATCACTGCAGTGCACCTTTCTCGGCTTGGTGAAGAATGGGTATTGTGGGCTTCAGAAGAATTTGGATTTATAACACCAAGTGACTCTGTTTCAACTGGAAGTAGTATAATGCCTCAGAAGAAGAATCCGGATCCAATGGAACTTGTCCGTGGGAAGTCTGCCAGAGTCATAGGAGACTTGGTTACTCTTCTCACACTGTGCAAAGGGCTTCCTCAAGCATATAATCGTGATTTGCAGGAAGACAAAGAACCGGTATTTGATAGCGTCAAAACCATTTTGGGGATGCTTGAGGTATCAGCAGAATTTGCACTGAACATTACTTTCAATCGTGGGAGAATACAAAAGGCTTTACCTGCTGGTTATCTTGATGCAACCACACTTGCTGATTATCTTGTCAAGAAGGGAGTGCCATTCAGAACGTCTCATGATATTGCTGGAAAATCTGTTGCTTTATGTACATTGAAAGACTGCCAACTGCTGGACTTGAGTCTCGACGAGCTGAGAAGTATAAGTCCAGTCTTTGAAAATGATGTGTATGAGTTTCTTGGAGTAGAAAATTCGATCCATAAATTCATTTCTTATGGTTCCACCGGGTCAGCATGTGTAGCCGAGCAAATTGACTACTGGATAAAAAAACTTGAACTGCAGTGA 1548 0.4696 MMSLGSLSSTFTLAPPFTRHHRHHSSAGSRTSSFPTRARIENVRMEPREVPNPKPKEEKLWGGRFKEGVTDVVERFTESISFDKELYKQDITGSRAHASMLAHQGLITASDRDSILQGLDEIERRIENGEFNWRTDREDVHMNIEAALTDMIGEPAKKLHTSRSRNDQVVTDLRLYCRDAIDEILASMKRLQVSLMTLALDNQGLIVPGYTHLQRAQPVLLQHLLLAYVEEIERDAGRLIDCRARMNFCPLGACALAGTGLPIDRFMTSDALGFTAPMRNSIDAVSDRDFILEFLSANAITAVHLSRLGEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPQAYNRDLQEDKEPVFDSVKTILGMLEVSAEFALNITFNRGRIQKALPAGYLDATTLADYLVKKGVPFRTSHDIAGKSVALCTLKDCQLLDLSLDELRSISPVFENDVYEFLGVENSIHKFISYGSTGSACVAEQIDYWIKKLELQ* 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4249 515 MobiDBLite consensus disorder prediction 13 59 - -
Lja1g4249 515 CDD Argininosuccinate_lyase 79 512 IPR009049 GO:0004056|GO:0042450
Lja1g4249 515 Hamap Argininosuccinate lyase [argH]. 59 510 IPR009049 GO:0004056|GO:0042450
Lja1g4249 515 Gene3D - 79 286 IPR024083 -
Lja1g4249 515 Pfam Lyase 63 357 IPR022761 -
Lja1g4249 515 PANTHER ARGININOSUCCINATE LYASE 73 512 IPR009049 GO:0004056|GO:0042450
Lja1g4249 515 PRINTS Argininosuccinate lyase family signature 250 266 - -
Lja1g4249 515 PRINTS Argininosuccinate lyase family signature 199 219 - -
Lja1g4249 515 PRINTS Argininosuccinate lyase family signature 288 312 - -
Lja1g4249 515 PRINTS Argininosuccinate lyase family signature 367 386 - -
Lja1g4249 515 PRINTS Argininosuccinate lyase family signature 158 180 - -
Lja1g4249 515 PRINTS Argininosuccinate lyase family signature 332 348 - -
Lja1g4249 515 SUPERFAMILY L-aspartase-like 60 512 IPR008948 GO:0003824
Lja1g4249 515 TIGRFAM argH: argininosuccinate lyase 60 508 IPR009049 GO:0004056|GO:0042450
Lja1g4249 515 Pfam Argininosuccinate lyase C-terminal 420 487 IPR029419 -
Lja1g4249 515 MobiDBLite consensus disorder prediction 41 59 - -
Lja1g4249 515 Gene3D Fumarase/aspartase (Central domain) 176 505 - -
Lja1g4249 515 PANTHER ARGININOSUCCINATE LYASE 73 512 - -
Lja1g4249 515 Gene3D - 417 489 - -
Lja1g4249 515 ProSitePatterns Fumarate lyases signature. 332 341 IPR020557 GO:0003824
Lja1g4249 515 PRINTS Fumarate lyase superfamily signature 288 315 IPR000362 -
Lja1g4249 515 PRINTS Fumarate lyase superfamily signature 204 222 IPR000362 -
Lja1g4249 515 PRINTS Fumarate lyase superfamily signature 159 177 IPR000362 -
Lja1g4249 515 PRINTS Fumarate lyase superfamily signature 332 348 IPR000362 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4249 K01755 - gmx:100796544 871.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4249 1 54483042 54487101 Lja1g4249 1 54483042 54487101 ECH