Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4241 ATGAAGCTTCAGATGTTGTACCAACTAAACCACTCTCAAAAATCCGCTTTTGCTGCGGTTTTCGTCATTCTCTTACCACCTTTCTTCCCCAACCTTTTCCATCCTCTGGATCGTGCTTCACCTTCAACGTTCTCTGAGTGGATTGCTCCCAAGCCTATGCATGAGGTTTTGCTTGAAGGTGCTTTGCAACACCAAACTTCTGTTGAACTGGAAACTAGTCTTTGGTCTCCCTTGACTTTCCAAGGATGGAAACCTTGTATCAAGCCTTCAAAATCACCATCACTACCTGAAAAGTCTACGGGTTTTGTCCAGTTTTTCCTTGATGGAGGGTTGAACCAACAGAAGATGGGGATATGTGATGCTGTGGCCGTTGCTAAAATTTTGAATGCGACGTTGGTGATCCCGCATTTTGAAGTGAATCCTGTTTGGCAAGATTCAAGTTCATTTGCAGATATATTTGATATCGATCACTTCATTGATGTCCTCCGTGATGAAGTATCTATAGTGAAAGAGCTTCCTAGTGACTACGCTTGGAGCTCAAGGGAGTACTATGCCACAGGCATAAGGGCTACAAGAATTAAAACAGCACCAGCTCATGCTACTGCTGACTGGTATATAGAAAATGTTTTGCCTGTAATTCAGAGTTATGGGATTGCTGCCGTTGCCCCATTTTCTCATCGCTTGACATTCAACAACTTGCCGTCAGACATCCAGCGTCTCCGTTGTAAGGTCAACTTTGAAGCACTGATCTTTGTTCCACATGTCAAGGAATTAGGAAAGGCCCTTGTTCACCGCCTTCGTTACCCTCCTAGTCTCAACCATGCAGAAGGGAATGGCTATTTGCCAGAGGAAACTGATAAGTTTGGAAAACAGCAAAGTGGAAAATTTGTGGTGTTGCATCTGCGTTTTGACAAAGATATGGCTGCTCATTCAGCCTGTGAATTTGGTGGAGGTATAGCTGAGAAACGTGCTCTTGCTAAGTACCGAAAGGTGATTTGGCAGGGAAGGGTAATGAAAACTCAATTCACTGATGAAGAGTTGAGAAGTCAGGGTCGTTGCCCGCTGACTCCTGAAGAGATTGGATTGCTCCTAGCAGCTTTGGGGTTCAACAACAGAACTCGGCTTTATCTTGCTTCCCACAAGGTTTATGGTGGAGAAGCTAGGTTGGAAACTTTAAGAAAGTTATTCCCTTTTATGGAAGACAAGAAGAGCCTAGTCTCTGCAGAGGAACTGGCCAATGTTAAAGGGAAGGCATCACTATCAGCTGCTGTTGATTATTATGTGAGCATGCACAGTGATATCTTCATTTCGGCTTCTCCAGGCAATATGCACAATGCTCTGGTGGGACATCGCTCTTACATGAATATGAAGACTATCAGACCAAACATGGCACTGTTGGGCCTGCTATTTCAGAATAAGAGCATGGGCTGGTCAGAATTTCAGGGGGCAGTTCTTGATGGTCACAAGAACAGACAAGGGCAGATAAGATTAAGAAAGGAGACACAATCAATATACACATATCCTGCTCCTGATTGCATGTGTAGAGCTTAA 1551 0.441 MKLQMLYQLNHSQKSAFAAVFVILLPPFFPNLFHPLDRASPSTFSEWIAPKPMHEVLLEGALQHQTSVELETSLWSPLTFQGWKPCIKPSKSPSLPEKSTGFVQFFLDGGLNQQKMGICDAVAVAKILNATLVIPHFEVNPVWQDSSSFADIFDIDHFIDVLRDEVSIVKELPSDYAWSSREYYATGIRATRIKTAPAHATADWYIENVLPVIQSYGIAAVAPFSHRLTFNNLPSDIQRLRCKVNFEALIFVPHVKELGKALVHRLRYPPSLNHAEGNGYLPEETDKFGKQQSGKFVVLHLRFDKDMAAHSACEFGGGIAEKRALAKYRKVIWQGRVMKTQFTDEELRSQGRCPLTPEEIGLLLAALGFNNRTRLYLASHKVYGGEARLETLRKLFPFMEDKKSLVSAEELANVKGKASLSAAVDYYVSMHSDIFISASPGNMHNALVGHRSYMNMKTIRPNMALLGLLFQNKSMGWSEFQGAVLDGHKNRQGQIRLRKETQSIYTYPAPDCMCRA* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4241 516 PIRSF UCP009360 1 516 IPR024709 -
Lja1g4241 516 PANTHER GDP-FUCOSE PROTEIN O-FUCOSYLTRANSFERASE 3 516 - -
Lja1g4241 516 CDD O-FucT_plant 102 459 IPR024709 -
Lja1g4241 516 Pfam GDP-fucose protein O-fucosyltransferase 108 454 IPR019378 -
Lja1g4241 516 PANTHER O-FUCOSYLTRANSFERASE 2-RELATED 3 516 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4241 Lja-Chr1 54330304 54335459 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4241 74 515 Miscellaneous Gene Families AT1G22460 33.766 1.67e-86 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4241 - - mtr:MTR_3g100310 874.004
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4241 1 54330304 54335459 Lja1g4241 1 54330304 54335459 ECH