Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4231 ATGCGTGTCACCGGGGATCTAGGGTTTTCGAGCCTGGTCCTTGTGGTGGTGGTGGTTGTTTGCGCCGTGATCGGTTTCGTGATTCGCCGGAAATGGCAGCTGTCGGTGGCTAGAAGCGAGGAGATCCAGAGGCTGTTGATTCTTGCTGCGGAGGAAACTGCCAGGGTTGAGAGAGAGGCTTCGTTTGTGTACGGCGAGGTGGTGGATTCTGCTGCGCATAACAACCATCAATGCGCTCTCTGCTATTTCCCCGCCACCAAGCGTTGCGCTCAGTGCAAATCCGTTCGTTACTGTTCTTCTGAGTGTCAAACAGTTCATTGGCGTCAAGGTCACAAATTTGAGTGTCATCTTCCCAGCAAAACTCACCAGAGTGATGATGTGATAAGTGATCTTCGCAAGAAGGTAGCAGAGAAAGACTACTCTGGAATCCATTGTGAGAAGTCTGAAATTGAAGGTACAGAACATAAAACATACTCGGGAAGATTCTCGGTTTCTGATATCGGCTTTTCTCCTGAAGTTTCATTAGGAAAGGATGATGATGTTAGAGTTGAGTCCCTTGCAGAGGCAAATCTAACCGATTCTAATTCTGAATTATCCAGTAACTCATTTTCTGGATTCTCTGCTTCCCCAAGTTCTAGTGATTCATCTGATGATTCCTCTACCTGTGAGAGTGTCATCTCAAATGAGCATGAGAAATCAGAGGCCCATACTTTTGTTGTTTCATCCCTTGATATTCCTGATAAAACTTCAGGTCATAATGGCATGGGTGAAGTCATGTCTTCTTCACCAAAGTTTGCAAGTTTGGTTGATTCTGTAGATGATTTTTCCACAATGCACAAATTAAATCATATTACACCTGGTTTTAGTAAAGAAGAGAGGAAGCTTGCATCAAATGTGACTTCAGGCTTGAGTATGTCAAAGGGGACGAAAATTGAGAATTCTACAGTGGATTCTGGATTTTGGGATAAAACTCTTGATTTGAGAGGGATTAAAGCTAATGCTAATGATGACACCATTGATAAGACTGATCCTGGATCTTCATTTCACTTTTCATTCAGTGGCATACCTCCTTTGCATGTACTAGGGACCAAGGCAAAGGATTCTGTGCCTAATGATTCTTTTCCAAACTCTGTTAGAAACAATTTGCCACTACCAGGATCAGTATCATCAGCGAATGACAGCGTGAATTCTTCAAAGATGAGGAATCTCTCTGTGATCAACAGCAAAGAGTCCAATGTTATGAGCCATAATACTCCTATCTGTTCTGAGTCTAATCAATTGGAATCTCAAGACAGCTCTGGGCCACCTTTACCTTCTTTCTCCTCTCAATCCTCTAGTGTTGGCAAAAATTCAGTTTGTGCAGATGCTTTTAGCATCCATAACTCGCAATCAGCTGGCTCAAAGGTATCAAATCGTGTTGTGGAAAACCATGGAAGCACCCTGAAGTCCACTGATATTAGAAGCCTGACAGGTGAACCTGATTCTAATTTAGCTTCTAGAACTGAAAGGCACTCACATTCCAGTATGAAACATGGGAAGAATGGCATTGAATCTGGCACTTCCTCCAAGGTTGCTAACTGTTCTGCAAATTCTAAGAGCGGCTTGAAAATGTCTGTATTGAAAGTAGTTGATCAGTTTAGGGGATCCAATTTGTCAAAGCACTTCCCACTAGCTGTCGGTAATGATATTGCTGGAAGATACAATGACAAGGGTATTTTTCCATATGAATTATTTGTCAAGCTTTATAACTTGAACAAGGTGGAGTCGCGCCCATTTGGTCTTATAAATTGTGGAAACAGTTGTTATGCTAATGCTGTTCTTCAGTGCTTAGCATTTACACCACCTCTGACTGCTTATTTGCTTCAAGGACTGCATTCTAAATCATGTGCAAATAAAAAAAGGTGTTTCACCTGTGAATTTGAAAGCTTGATTTTGAAGTCAAAGGACACGAAATCTCCCCTGTCTCCTATTGGCATACTCTCTCAATTACAGAGCATTGGGAGTCAGCTTGGCAATGGCAGAGAAGAAGATGCACATGAATTTCTGAGGCATGCTATTGATACAATGCAATCGGCTTGCCTTGTGGAAGCTGGGATTAAAGCATCAGGTTCATTGGAAGAAGACACAACTTTAATGGGTCTAACATTTGGAGGCTACCTTAGATCAAAGATAAAATGCATGAAATGTGGCGGGAAGTCTGAGCGTCACGAAAGGATGATGGATCTGACTGTTGAGATTGAAGGGGAGATAACCACCCTAGTGGAGGCCCTTCGGCGGTTTACAAGCACCGAGGCTTTGGATGGAGAAAACAAGTACCACTGTGACAGGTGTAAATCTTATGAGAAGGCCAAGAAGAAGCTGACAATTTCGGAGGCACCCAATGTTCTTACAATTGCATTAAAGAGATTTCAGTCCGGAAAATTTGGCAAACTCAACAAGCCTATTCAATTTCCTGAAATACTTGACTTGGCACCTTTTGTGAGTGGGACTAGTGATAAATCACCCATATACAGATTGTATGGGGTAGTTGTTCACTTGGATATTATGAATGCTGCTTTCTCTGGTCACTATGTGTGCTATGTTAAGAATATTCAAAACAAGTGGTTCAAGGTTGATGACAGTGTGGTGACAGCTGTTGAATCTGAGAGAGTGTTAACGAAAGGAGCTTATATGCTTTTTTATGCAAGGTGCTCGCCAAGGGCTCCAAGATTAATCAGGAACAGGATACTATCCCCAGATTCGAAAAGCAAAGTCAATGGAAAGACTCTTGCAACGAAAGCAAGACATGTACCTATAAGTTCTGGTGCTGCTATGAGTAGTTCGATTTCTCCAGATGGCTCACCCGCTTTAGAGTCTTTCTATTCAAAGTTTCACCAACTGAAAGGGATTTTACAAGAAGACTCATCAAGTGATAGTTCATCCCTTTTCAGCAGCAATTCTGATGAAGGATCTTGCAGTACTGAAAGTAGGCGTGATTCAACCAGCATTGATGACTTCTCTGACTATATTTTTGGTGATTCAGGACGTGGCTGGAGTAGCCTGTGGAGGAATTCGGATTCTGACACATCGTCAACCTCCTCATCCCCCTTGAACTTCAGACATTCGCCCCTGTCGGATATGGACCGGTATGATTCAGTTTCTCCAGTTGCAACTGGTTTGCGAATTCCCACAGGTTCAAGTTCTGAGATAGATGGTCCTTCACACAGGAGCAGAGAGATGGATGTTGAGAGGAAAGGGGTAGGTGACAGTTCACTGCATAGAAAGTTAGATAGTGGTAGGGTTAGCAGCAGCAGTAGTAGTAGTAGTAGTAGGGAGACTGACTCGTTTCTGAAACTAAGAACTGACCATTTTAATGATGTAAACACTAATTTATCATGTAGAAAATCAAGGAAGAGAACAGATTGA 3405 0.4247 MRVTGDLGFSSLVLVVVVVVCAVIGFVIRRKWQLSVARSEEIQRLLILAAEETARVEREASFVYGEVVDSAAHNNHQCALCYFPATKRCAQCKSVRYCSSECQTVHWRQGHKFECHLPSKTHQSDDVISDLRKKVAEKDYSGIHCEKSEIEGTEHKTYSGRFSVSDIGFSPEVSLGKDDDVRVESLAEANLTDSNSELSSNSFSGFSASPSSSDSSDDSSTCESVISNEHEKSEAHTFVVSSLDIPDKTSGHNGMGEVMSSSPKFASLVDSVDDFSTMHKLNHITPGFSKEERKLASNVTSGLSMSKGTKIENSTVDSGFWDKTLDLRGIKANANDDTIDKTDPGSSFHFSFSGIPPLHVLGTKAKDSVPNDSFPNSVRNNLPLPGSVSSANDSVNSSKMRNLSVINSKESNVMSHNTPICSESNQLESQDSSGPPLPSFSSQSSSVGKNSVCADAFSIHNSQSAGSKVSNRVVENHGSTLKSTDIRSLTGEPDSNLASRTERHSHSSMKHGKNGIESGTSSKVANCSANSKSGLKMSVLKVVDQFRGSNLSKHFPLAVGNDIAGRYNDKGIFPYELFVKLYNLNKVESRPFGLINCGNSCYANAVLQCLAFTPPLTAYLLQGLHSKSCANKKRCFTCEFESLILKSKDTKSPLSPIGILSQLQSIGSQLGNGREEDAHEFLRHAIDTMQSACLVEAGIKASGSLEEDTTLMGLTFGGYLRSKIKCMKCGGKSERHERMMDLTVEIEGEITTLVEALRRFTSTEALDGENKYHCDRCKSYEKAKKKLTISEAPNVLTIALKRFQSGKFGKLNKPIQFPEILDLAPFVSGTSDKSPIYRLYGVVVHLDIMNAAFSGHYVCYVKNIQNKWFKVDDSVVTAVESERVLTKGAYMLFYARCSPRAPRLIRNRILSPDSKSKVNGKTLATKARHVPISSGAAMSSSISPDGSPALESFYSKFHQLKGILQEDSSSDSSSLFSSNSDEGSCSTESRRDSTSIDDFSDYIFGDSGRGWSSLWRNSDSDTSSTSSSPLNFRHSPLSDMDRYDSVSPVATGLRIPTGSSSEIDGPSHRSREMDVERKGVGDSSLHRKLDSGRVSSSSSSSSSRETDSFLKLRTDHFNDVNTNLSCRKSRKRTD* 1135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4231 1134 MobiDBLite consensus disorder prediction 194 223 - -
Lja1g4231 1134 Pfam MYND finger 78 115 IPR002893 -
Lja1g4231 1134 MobiDBLite consensus disorder prediction 968 993 - -
Lja1g4231 1134 MobiDBLite consensus disorder prediction 194 240 - -
Lja1g4231 1134 MobiDBLite consensus disorder prediction 1017 1111 - -
Lja1g4231 1134 MobiDBLite consensus disorder prediction 371 445 - -
Lja1g4231 1134 ProSiteProfiles Zinc finger MYND-type profile. 78 115 IPR002893 -
Lja1g4231 1134 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 593 608 IPR018200 GO:0004843|GO:0006511
Lja1g4231 1134 MobiDBLite consensus disorder prediction 497 511 - -
Lja1g4231 1134 MobiDBLite consensus disorder prediction 477 496 - -
Lja1g4231 1134 SUPERFAMILY HIT/MYND zinc finger-like 74 118 - -
Lja1g4231 1134 MobiDBLite consensus disorder prediction 477 523 - -
Lja1g4231 1134 Gene3D Cysteine proteinases 584 907 - -
Lja1g4231 1134 MobiDBLite consensus disorder prediction 1017 1034 - -
Lja1g4231 1134 SUPERFAMILY Cysteine proteinases 589 899 IPR038765 -
Lja1g4231 1134 Gene3D - 62 120 - -
Lja1g4231 1134 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 19 1115 - -
Lja1g4231 1134 MobiDBLite consensus disorder prediction 968 984 - -
Lja1g4231 1134 MobiDBLite consensus disorder prediction 1090 1107 - -
Lja1g4231 1134 Pfam Ubiquitin carboxyl-terminal hydrolase 592 894 IPR001394 GO:0004843|GO:0016579
Lja1g4231 1134 MobiDBLite consensus disorder prediction 1065 1089 - -
Lja1g4231 1134 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 16 19 1115 - -
Lja1g4231 1134 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 592 897 IPR028889 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4231 Lja-Chr1 54145894 54153783 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4231 572 901 Miscellaneous Gene Families AT4G31670 50.755 7.19e-118 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4231 K11855 - gmx:100793079 1468.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4231 1 54145894 54153783 Lja1g4231 1 54145894 54153783 ECH