Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4230 ATGAATTTCAAGTTTTTTACTGCTTTAATTCTCTACTCAGTAATTTACCTGAGTAGCAGAAGCTATGCCTTTGACCCTTGTGCTTCTCAACCTGATGACTCAGACCTGAGCGTGATTCCCATCTATGGCAAATGCTCCCCATTCAACCCACCAAAAATCTCATGGGACAACCGTGTCATGGACATGGCCTCCAAGGACGACCCAGCACGACTCACTTACCTCTCCGCCCTCGCCGCCCAAAAGACCGTCTCCACCGCACCAATCGCCTCCGGCCAGGCCTTCAACATAGGCAACTACATTGTCCGTGTCAAGATCGGAACCCCCGGCCAGCTCCTCTTCATGGTCCTCGACACCAGCACCGACGAGGCTTTCGTCCCGTGCTCCGGCTGCACCGGCTGCTCCACCACCACCGCTCCATTTTCCCCCAAAGCATCTACCACATACAGCCCGCTCGACTGCTCCGTCCCACTGTGCGGCCAGGTCCGCGGCCTCTCCTGCCCCGCCACGGGCTCCGCCACGTGCTCCTTCAACCAATCCTACGCCGGCTCCACCTTCTCCGCCACACTAGTACAAGACTCCCTCAGCTTAGCCACAGACGCCGTCCCCAACTACTCTTTTGGTTGCATTAACGCGATCTCGGGCGCGACTGTCCCAGCCCAGGGGCTTCTTGGACTGGGACGTGGCCCATTGTCTCTATTGTCCCAAACCGGGACAAACTACTCGGGAGTCTTTTCATACTGCCTCCCGAGTTTCAAATCATACTACTTCTCCGGGTCATTGAAACTCGGGCCCGTGGGCCAGCCCAAGAGCATCCGAACCACCCCGCTCCTTCGCAACCCACACCGCCCTTCTCTTTACTACGTCAACCTAACCGGAATCAGCGTGGGGCGTGTGCTCGTGCCCGTTCCGGCCGAGTCTCTAGCATTTAACCCGAGCACGGGAGCTGGAACGGTCATCGACTCAGGCACAGTGATAACCCGGTTCATTGAACCGGTTTACGCTGCGGTCAGAGAAGAGTTCAGGAAGCAGGTTACCGGACCCTTCTCGAGCCTTGGTGCGTTCGACACGTGTTTTGTGAAGACCTACGAGACGCTGGCACCTGTAGTTACGCTGCATTTGGAGGGGCTGGACCTGAAGCTGCCATTGGAGAACAGCTTGATTCACAGTAGCTCGGGGTCGTTGGCTTGCCTTGCGATGGCGGCGGCGCCGGAAAATGTGAACTCTGTGCTGAACGTGATTGCTAACTACCAGCAACAGAATCTTAGGGTGCTGTTTGATACAGTGAATAATAAGGTTGGGATAGCCCGTGAACTTTGTAACTAG 1323 0.5608 MNFKFFTALILYSVIYLSSRSYAFDPCASQPDDSDLSVIPIYGKCSPFNPPKISWDNRVMDMASKDDPARLTYLSALAAQKTVSTAPIASGQAFNIGNYIVRVKIGTPGQLLFMVLDTSTDEAFVPCSGCTGCSTTTAPFSPKASTTYSPLDCSVPLCGQVRGLSCPATGSATCSFNQSYAGSTFSATLVQDSLSLATDAVPNYSFGCINAISGATVPAQGLLGLGRGPLSLLSQTGTNYSGVFSYCLPSFKSYYFSGSLKLGPVGQPKSIRTTPLLRNPHRPSLYYVNLTGISVGRVLVPVPAESLAFNPSTGAGTVIDSGTVITRFIEPVYAAVREEFRKQVTGPFSSLGAFDTCFVKTYETLAPVVTLHLEGLDLKLPLENSLIHSSSGSLACLAMAAAPENVNSVLNVIANYQQQNLRVLFDTVNNKVGIARELCN* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4230 440 Gene3D Acid Proteases 75 263 IPR021109 -
Lja1g4230 440 Pfam Xylanase inhibitor C-terminal 286 435 IPR032799 -
Lja1g4230 440 ProSiteProfiles Peptidase family A1 domain profile. 99 435 IPR033121 -
Lja1g4230 440 Pfam Xylanase inhibitor N-terminal 99 263 IPR032861 -
Lja1g4230 440 PANTHER ASPARTYL PROTEASE AED3 9 440 - -
Lja1g4230 440 PANTHER ASPARTYL PROTEASE-RELATED 9 440 IPR001461 GO:0004190|GO:0006508
Lja1g4230 440 SUPERFAMILY Acid proteases 92 439 IPR021109 -
Lja1g4230 440 Gene3D Acid Proteases 264 440 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4230 Lja-Chr1 54099591 54101777 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4230 63 440 Miscellaneous Gene Families AT1G77480 26.190 8.72e-17 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4230 - - gmx:100816307 710.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4230 1 54099591 54101777 Lja1g4230 1 54099591 54101777 ECH