Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4228 ATGGGTCTCAAGGGATTCTTGGAAGGTGGTGTTGCTTCCATCGTTGCCGGAACCACCACTCACCCACTCGACCTCATCAAGGTTCGCATGCAGCTTCAGGGTGAGAATCTCCCGGCACACAATCTCCGGCCAGCTTTCGCCTTTCACTCACATTCAGCCACCCTTCCTCCTCCTCCTCCGTCAGGACCCATCTCCGTCGGCGTCCGAATCATCAGAACGGAAGGCGCCGCCGCTCTCTTCTCCGGCGTCTCCGCCACCGTGCTCCGGCAGACTCTCTACTCCACCACCCGCATGGGTCTCTACGACGTCCTCAAGCAGAAATGGAGCGACCCGGAGCGCGGCACCATGCCGCTCACAAGCAAGATCACGGCGGGACTTATCGCCGGAGGGATCGGCGCCGCCGTGGGGAACCCCGCGGATGTTGCGATGGTGCGTATGCAGGCTGATGGGAGACTCCCGGCGGCTCAGCGGCGGAATTATAAGGGAGTTTTCGACGCGATCCGGCGGATGGCGGGGGAAGAGGGGATTGGTTCCCTGTGGCGCGGGTCAGGGCTTACGGTGAACCGCGCGATGATCGTGACGGCTTCTCAGCTGGCGTCGTACGACCAGTTCAAGGAGACAATTGTTGGGAAAGGGTGGATGAACGATGGTATTGGGACCCACGTGGCGGCGAGCTTTGCGGCGGGGTTTGTGGCGGCGGTGGCGTCGAACCCGGTGGATGTGATCAAGACTAGGGTTATGAACATGAAGGTGGATGCTGGGGAGGCCCCACCCTACAATGGGGCATTGGATTGTGCACTCAAGACTGTTAAGGCTGAAGGGCCATTGGCACTTTACAAGGGTTTCATCCCTACAATTTCAAGGCAGGGTCCCTTCACTGTTGTTCTGTTTGTCACTCTTGAACAAGTTAGAAAGCTCCTCAAGGAGTTTTAA 933 0.5874 MGLKGFLEGGVASIVAGTTTHPLDLIKVRMQLQGENLPAHNLRPAFAFHSHSATLPPPPPSGPISVGVRIIRTEGAAALFSGVSATVLRQTLYSTTRMGLYDVLKQKWSDPERGTMPLTSKITAGLIAGGIGAAVGNPADVAMVRMQADGRLPAAQRRNYKGVFDAIRRMAGEEGIGSLWRGSGLTVNRAMIVTASQLASYDQFKETIVGKGWMNDGIGTHVAASFAAGFVAAVASNPVDVIKTRVMNMKVDAGEAPPYNGALDCALKTVKAEGPLALYKGFIPTISRQGPFTVVLFVTLEQVRKLLKEF* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4228 310 Gene3D Mitochondrial carrier domain 4 309 IPR023395 -
Lja1g4228 310 ProSiteProfiles Solute carrier (Solcar) repeat profile. 116 207 IPR018108 -
Lja1g4228 310 ProSiteProfiles Solute carrier (Solcar) repeat profile. 216 306 IPR018108 -
Lja1g4228 310 PRINTS Mitochondrial brown fat uncoupling protein signature 295 310 IPR002030 GO:0006839|GO:0031966
Lja1g4228 310 PRINTS Mitochondrial brown fat uncoupling protein signature 14 26 IPR002030 GO:0006839|GO:0031966
Lja1g4228 310 PRINTS Mitochondrial brown fat uncoupling protein signature 101 113 IPR002030 GO:0006839|GO:0031966
Lja1g4228 310 PRINTS Mitochondrial brown fat uncoupling protein signature 170 187 IPR002030 GO:0006839|GO:0031966
Lja1g4228 310 PRINTS Mitochondrial brown fat uncoupling protein signature 213 231 IPR002030 GO:0006839|GO:0031966
Lja1g4228 310 PANTHER MITOCHONDRIAL DICARBOXYLATE CARRIER-RELATED 1 310 - -
Lja1g4228 310 ProSiteProfiles Solute carrier (Solcar) repeat profile. 4 107 IPR018108 -
Lja1g4228 310 PANTHER UNCOUPLING PROTEIN 5-RELATED 1 310 - -
Lja1g4228 310 Pfam Mitochondrial carrier protein 116 209 IPR018108 -
Lja1g4228 310 Pfam Mitochondrial carrier protein 4 107 IPR018108 -
Lja1g4228 310 Pfam Mitochondrial carrier protein 218 308 IPR018108 -
Lja1g4228 310 SUPERFAMILY Mitochondrial carrier 4 303 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4228 Lja-Chr1 54061844 54063234 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4228 1 309 Miscellaneous Gene Families AT5G09470 60.472 5.02e-127 364
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4228 K15104 - vvi:100245527 479.944
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4228 1 54061844 54063234 Lja1g4228 1 54061844 54063234 ECH