Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4227 ATGACCAATAACACAGATTTGTCTCAGGGAAATAATAATGGTGGTGCTTCTCTTCCTCCTAATCCCCAGTCGGGGCCAAAAGACCATTCTCATGTTATTAGCGGCAATGCGATTTTCAAGAGTGGGCCCCTTTTCATATCTTCCAAAGGAATTGGATGGACATCCTGGAAGAAAAGATGGTTTATTTTAACACAAACTTCACTTGTGTTCTTCAGAAGTGATCCAAATGCAGTCCCTCAGAAGGGAAATGAAGTGAATTTGACCCTTGGTGGCATAGACCTCAACAATTCAGGCAGTGTCATTGTCAAACCAGACAAGAAACTCTTGACTGTTCAATTTCCTGATGGTCATGATGGACGAGCTTTCACACTTAAGGCTGAAACCACGGAGGATTTGTATGAGTGGAAGACCGCACTTGAAAAGGCTTTGGCACAATCACCTAGTGTTGCCAATGTGATGGAGCAAAATGGTATCCTCAGGAACGATCAGAATGATTCAATTGATATTTCTTTGGACCAGTTGAAGGATAGAGACCCGCCTAAATCTACTGTCATTGGCCGGCCAATTTTACTTGCTTTGGAGGATGTTGATGGAACCCCATCATTTTTGGAAAAAGCCCTGAAATTCATCGAAGAGCATGGAGCCAGTGTAGAAGGGATCTTACGACAAGCAGCTGATGTTGATGACGTTGAACGTCGAGTTCGGGAATATGAACAAGGAAAAATTGATTTTTCACCAGATGAGGATGCACATGTCATTGGGGATTGTGTTAAGCATGTAATTCGGGAATTGCCATCATCTCCAGTACCTGCATCTTGTTGTAAGGCACTGTTAGAAGCTTGCCGAACTGAACGTGGTAATAGGGTTGCTGCTATGCGCGCAGCAATAAATGACACTTTCCCCGAACCAAATCGCCGCTTATTGCAAAGAATACTCTTGATGATGCAAACCGTGGCTTCACGCAAAACTGTGAATAGAATGAGCTCCTCAGCTGTGGCAGCTTGCATGGCACCTCTACTTCTTCGCCCCCTTCTAGCTGGAGAGTGTGAGATCGAAAATGATTTTGATGTAGGCGGTGATGGTTCTATTCAACTTTTACAAGCAGCTGCAGCAGCAAACCATGCTCAAGCAATTGTTATAACTTTATTAGAAGAATATAACACCATATTTGGGGAAGGCTCTGTGTCCCCTGATATATACACTGACTCAGAAGAAGAGAGTGAGTCTGAGAGCGAGGAGGCTACTGATGATGATTTATCTTATGATGATGAGGAGGAGGATTATGATGATGAACACGATGGATCATCACAGGAGTCTGATGCAGACGATGATCATGTTAGCGAATCCTACAGTGGATCTGGAGAATCTGATGTTGATAATACTCCCAATAAAAAGGACCATGATCATTCTAGTTCAAGTTCAAAATCCTCAAGTGTGAGTGAAGAAAACAAAGCCAAACCAAAGTTAAAAACTAAGTCACTTGAAGGCTCCCCAACTCAACCTGATGAATTCAAAAGCTGTGAAAATCTCGCGAGCCCGAAGAAGTCTGGTTATGCAGATCATTCCAATAAACCTGCTGATATAGTTGGAGAACTTTCCACAGACCAAGCTGCATTGCATAATTCAGATTTTCCTAGCCCTACTTCATGTATCAGAAAATCCAATACCATATCCAACGGCCCAACTACTCGGCACCGCATCATGGGGCGTACCGCTGCAAGGAAGAACCTCTCCATGGAATCCATTGATTTTTCTGTTGATGAGGATGGAGATGGAATTGAAAGGCTCGAAGCTTCTAAAGCTGAACTACAAAACGAAATTGCAGAGGAGGTTAAGGCAAATGCAAAGCTGCAATCTCATATAGATGATCAAAAGAAATCCTTGCATGAGCGTCGTTCGGCACTTGAGCAAGATGTGGCTAGACTACAGGAACAGTTGCACAAAGAGAAGAATTTCCGGGCAACTCTTGAGAACAAGGCTGAGCTGGAGGAATTAGCTCTGGTAGAATTGGATCTTGCCAACATCGAGCAGAAGGTTGAGGAGATTGCGGTGCGGCTTAATATAAAACTTGACCGGAATTATGGATCTACTTCAGATTTCTATAATCAACAACGACAAATGTCGCATCAGGAAAGAAAATTGAAATATAAGTTAGGTACTGAAGTTGCTGCCGCACCACAATCGGACAGGTCAATAACTAAGGACATTCATCTTGGTGGAGCAGTAAGTGATATTGAGAGAAAGCCTGAGTCAACACCTTTATCAAACAAACAGCCACCATCTGGTTCCAAGAAATCTGGTTCAAAGGGTGATGTGGGCCGAAGCCAGGAAGGAAAAGGATCTGAGCGTCACCAAACACTTCCATCCCCTAACAGGTATGGAGGATCTGAAATCAATGCTGTGCCGCTCCCGGAAAAGGGTAGAGGCTTAGAAAGTTCCCAGCAACTCCAGGATTCAGATAGAGCATCATCAGGTAAAGGCAAATCACATCAAAATCCAGACAAATTGAAGAAATCAGAGTCTCAGCCAGGCCACCACTCAGAGGGATGGAGTCAGCATTCGAAGCACTTGGAAAGAGGAAGGTCAGAAGGGCATCATCAGGCTTATAATGTGGATAAAGGTCGATGA 2628 0.4368 MTNNTDLSQGNNNGGASLPPNPQSGPKDHSHVISGNAIFKSGPLFISSKGIGWTSWKKRWFILTQTSLVFFRSDPNAVPQKGNEVNLTLGGIDLNNSGSVIVKPDKKLLTVQFPDGHDGRAFTLKAETTEDLYEWKTALEKALAQSPSVANVMEQNGILRNDQNDSIDISLDQLKDRDPPKSTVIGRPILLALEDVDGTPSFLEKALKFIEEHGASVEGILRQAADVDDVERRVREYEQGKIDFSPDEDAHVIGDCVKHVIRELPSSPVPASCCKALLEACRTERGNRVAAMRAAINDTFPEPNRRLLQRILLMMQTVASRKTVNRMSSSAVAACMAPLLLRPLLAGECEIENDFDVGGDGSIQLLQAAAAANHAQAIVITLLEEYNTIFGEGSVSPDIYTDSEEESESESEEATDDDLSYDDEEEDYDDEHDGSSQESDADDDHVSESYSGSGESDVDNTPNKKDHDHSSSSSKSSSVSEENKAKPKLKTKSLEGSPTQPDEFKSCENLASPKKSGYADHSNKPADIVGELSTDQAALHNSDFPSPTSCIRKSNTISNGPTTRHRIMGRTAARKNLSMESIDFSVDEDGDGIERLEASKAELQNEIAEEVKANAKLQSHIDDQKKSLHERRSALEQDVARLQEQLHKEKNFRATLENKAELEELALVELDLANIEQKVEEIAVRLNIKLDRNYGSTSDFYNQQRQMSHQERKLKYKLGTEVAAAPQSDRSITKDIHLGGAVSDIERKPESTPLSNKQPPSGSKKSGSKGDVGRSQEGKGSERHQTLPSPNRYGGSEINAVPLPEKGRGLESSQQLQDSDRASSGKGKSHQNPDKLKKSESQPGHHSEGWSQHSKHLERGRSEGHHQAYNVDKGR* 876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4227 875 CDD PH 40 139 - -
Lja1g4227 875 Coils Coil 625 685 - -
Lja1g4227 875 Pfam PH domain 40 143 IPR001849 -
Lja1g4227 875 MobiDBLite consensus disorder prediction 1 30 - -
Lja1g4227 875 SMART PH_update 38 146 IPR001849 -
Lja1g4227 875 MobiDBLite consensus disorder prediction 823 875 - -
Lja1g4227 875 Coils Coil 586 620 - -
Lja1g4227 875 Gene3D - 27 146 IPR011993 -
Lja1g4227 875 SUPERFAMILY PH domain-like 10 144 - -
Lja1g4227 875 Pfam RhoGAP domain 200 343 IPR000198 GO:0007165
Lja1g4227 875 SMART RhoGAP_3 197 387 IPR000198 GO:0007165
Lja1g4227 875 MobiDBLite consensus disorder prediction 1 33 - -
Lja1g4227 875 MobiDBLite consensus disorder prediction 535 565 - -
Lja1g4227 875 MobiDBLite consensus disorder prediction 752 769 - -
Lja1g4227 875 ProSiteProfiles Rho GTPase-activating proteins domain profile. 191 390 IPR000198 GO:0007165
Lja1g4227 875 PANTHER RHO GTPASE-ACTIVATING PROTEIN 7 6 746 - -
Lja1g4227 875 Gene3D Rho GTPase activation protein 168 391 IPR008936 GO:0007165
Lja1g4227 875 SUPERFAMILY GTPase activation domain, GAP 199 392 IPR008936 GO:0007165
Lja1g4227 875 MobiDBLite consensus disorder prediction 399 437 - -
Lja1g4227 875 PANTHER RHO GTPASE-ACTIVATING PROTEIN REN1 6 746 - -
Lja1g4227 875 MobiDBLite consensus disorder prediction 741 875 - -
Lja1g4227 875 CDD RhoGAP 200 338 - -
Lja1g4227 875 MobiDBLite consensus disorder prediction 393 565 - -
Lja1g4227 875 ProSiteProfiles PH domain profile. 37 144 IPR001849 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4227 - - gsj:114415231 1157.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4227 1 54052092 54060572 Lja1g4227 1 54052092 54060572 ECH