Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4219 ATGGACTCTGTTCCCTTTCGCGATGGCAACATACACAAACTGCTCCAGACACGTTACCTCAACACTCGTCTAGATGTTAATCATACTTTGCAGACACACTCTTCGTTGATTCGGAGGCTTTCTCAAGACAGAGAGTTAGAGGGCCACCTTGGCTGTGTTAATGCGGTGGCTTGGAATTCCACAGGTTCAATGCTGATATCTGGATCAGATGATACAAGGATCAATATTTGGAGCTACTCTAGTAAAAAACTTTTGCATTCAATTGATACTGGACATTCTGCAAATATATTCTGTACCAAGTTTGTACCAGAAACTTCTGATGAGCTTGTAGTCTCTGGAGCTGGAGATGCTGAAGTTCGGTTATTTAACCTGTCTCGCTTAAGTGGGAGAGGGTTCAGTGATGAGGCCATTGCTCCATTCGCACTTTATCAATGTCACAGTCGAAGAGTCAAGAAATTGGCTGTTGAAAATGGAAATCCCAATGTGGTGTGGAGTGCTAGTGAAGATGGGACCTTAAGACAGCATGATTTTCGGGAAGGTACCACTTGTCCTCCAGCAGGATCTTCACATCAAGAGTGTCGAAATGTTCTACTTGACTTACGGAGTGGAGCTAAAAGGTCACTTGCTGATCCTCCTAAACAAGTCCTTGCTCTAAAATCTTGTGATATTAGCTCAACTAGGCCGCATTTGCTCCTTGTTGGTGGGAGTGATGCCTTTGCACGTTTATATGATAGAAGGATGCTACCACCCCTGAGTTCCTGTCGGCAAAGAATGTCTCCACCTCCTTGTGTTAATTACTTCTGTCCAATGCATCTTTCTGACCGTGGACATCCAAGCTTGCACTTAACTCATGTTACATTTAGTCCTGATGGACATGAGGTTCTTCTCAGCTATAGTGGAGAGCATGTTTACTTGATGAATGTAAATAACGCTGGAGTGAATGAGTTGCAGTATACTCCAGAAGACGTTTCAAAGCTGATGACATACTCTCCAACAATTAATGGGGTAGAATTGCAACCGTTTGTCTCCAATGTCTTCCCAAATGGATTTTCTGTTAAAAATAACATTGCTGCAAAGCTTGAAAAGTGCAGGAAACTATTAAAGTTCGCTAAGAGGTCATTGGACGACGGGATGCCCTATCATGGAATTGAGGCATGCAATGAAGTTATGAATGGCTACAGTCATATTATTGTGCCTGCACTAAAACATGAATGCTTGTGTATGCGTGCTGCACTATTGCTTAAGAGGAAGTGGAAAAATGATGCTCATATGGCTATAAGAGACTGCTATGCTGCCAGGAAAATTGATACTTCCTCCTATAAAGCACTTTATTATATGTCAGAAGCATTGTCACAGTTGGGTAGACACAAAGAAGCTTTAGATTTTGCTGTTGCTTCCCACTCTTTGGCCCCATCCAAATCTGAAGTTGCAGAAAGAGTTGAGAATGTGAAGAAGGATATTGCTTTAGCTGAAGCTGAGAAAAATCGTAAGACGGATGATGGAGCATCAAGGTCTGACCGTCGAGGTGGAAGGATATTATCATTAAGTGACATACTCTATCGTTCAGAGGCTAATAGTGATGGTTCTCAAGACGATCAAAGATCAGAGAGGGATGACTCTGATTATGATGATAATGATGATGATGATGATGATGATGATGAGGAATTGGAGTTGGACTTTGAAACATCAATATCTGGTGATGAGGGGCATGATCCTGAATCAAATATTCTTCATGGGAGTTTAAATCTTAAAATTCACCGAAGAGATGACTCCAGAGAACCTGCTGGTGCAGAAGACTCATGTGAATCACCCTCATCATCATCGCAGAATGGTAGAGCGGCTTACCAGCCTGAAGCAGCTGTTGATATGAAGCAGAGATTTATTGGCCACTGCAATGTTGGGACAGATATAAAACAAGCCAGTTTTCTTGGTCAAAAAGGTGAGTATGTTGCCAGTGGAAGTGATGATGGCAGATGGTTTATCTGGGAAAAGCGAACTGGTAGACTCATAAAAATGCTGAATGGCGATGAATCCGTTGTAAATTGTGTACAATGCCATCCATTTGATTTTGTTGTGGCAACTAGTGGAATCGACAGCACAATAAAGATATGGACTCCAAGTGCTCCAGTTCCATCATCGGTGGCTGGTGGTTCATCAGGACCAGAAAGTGGTGATGTGTTGGCTGCTATGGAGAGCAATCAACAAAAATTATCCCGTAACCGCAACTCTATCCTGCCCTTTGAGCTTTTGGAGCCTTTCAGAATGCATGAGTTTCCTGAACGGTCATTACGCCTGCGCCCTTTTGAATGCGCCCAAAGCTAA 2322 0.4268 MDSVPFRDGNIHKLLQTRYLNTRLDVNHTLQTHSSLIRRLSQDRELEGHLGCVNAVAWNSTGSMLISGSDDTRINIWSYSSKKLLHSIDTGHSANIFCTKFVPETSDELVVSGAGDAEVRLFNLSRLSGRGFSDEAIAPFALYQCHSRRVKKLAVENGNPNVVWSASEDGTLRQHDFREGTTCPPAGSSHQECRNVLLDLRSGAKRSLADPPKQVLALKSCDISSTRPHLLLVGGSDAFARLYDRRMLPPLSSCRQRMSPPPCVNYFCPMHLSDRGHPSLHLTHVTFSPDGHEVLLSYSGEHVYLMNVNNAGVNELQYTPEDVSKLMTYSPTINGVELQPFVSNVFPNGFSVKNNIAAKLEKCRKLLKFAKRSLDDGMPYHGIEACNEVMNGYSHIIVPALKHECLCMRAALLLKRKWKNDAHMAIRDCYAARKIDTSSYKALYYMSEALSQLGRHKEALDFAVASHSLAPSKSEVAERVENVKKDIALAEAEKNRKTDDGASRSDRRGGRILSLSDILYRSEANSDGSQDDQRSERDDSDYDDNDDDDDDDDEELELDFETSISGDEGHDPESNILHGSLNLKIHRRDDSREPAGAEDSCESPSSSSQNGRAAYQPEAAVDMKQRFIGHCNVGTDIKQASFLGQKGEYVASGSDDGRWFIWEKRTGRLIKMLNGDESVVNCVQCHPFDFVVATSGIDSTIKIWTPSAPVPSSVAGGSSGPESGDVLAAMESNQQKLSRNRNSILPFELLEPFRMHEFPERSLRLRPFECAQS* 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4219 773 Gene3D - 621 758 IPR015943 GO:0005515
Lja1g4219 773 SUPERFAMILY TPR-like 400 476 IPR011990 GO:0005515
Lja1g4219 773 MobiDBLite consensus disorder prediction 600 614 - -
Lja1g4219 773 ProSiteProfiles Trp-Asp (WD) repeats profile. 673 704 IPR001680 GO:0005515
Lja1g4219 773 Gene3D Tetratricopeptide repeat domain 352 487 IPR011990 GO:0005515
Lja1g4219 773 MobiDBLite consensus disorder prediction 588 616 - -
Lja1g4219 773 MobiDBLite consensus disorder prediction 519 554 - -
Lja1g4219 773 Coils Coil 473 500 - -
Lja1g4219 773 SMART WD40_4 620 663 IPR001680 GO:0005515
Lja1g4219 773 SMART WD40_4 211 244 IPR001680 GO:0005515
Lja1g4219 773 SMART WD40_4 39 78 IPR001680 GO:0005515
Lja1g4219 773 SMART WD40_4 265 307 IPR001680 GO:0005515
Lja1g4219 773 SMART WD40_4 81 123 IPR001680 GO:0005515
Lja1g4219 773 SMART WD40_4 136 176 IPR001680 GO:0005515
Lja1g4219 773 SMART WD40_4 666 705 IPR001680 GO:0005515
Lja1g4219 773 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 46 81 - -
Lja1g4219 773 ProSiteProfiles Trp-Asp (WD) repeats profile. 46 87 IPR001680 GO:0005515
Lja1g4219 773 PANTHER WD AND TETRATRICOPEPTIDE REPEATS PROTEIN 1 23 772 - -
Lja1g4219 773 Gene3D - 24 133 IPR015943 GO:0005515
Lja1g4219 773 Gene3D - 134 332 IPR015943 GO:0005515
Lja1g4219 773 MobiDBLite consensus disorder prediction 537 554 - -
Lja1g4219 773 Pfam WD domain, G-beta repeat 627 662 IPR001680 GO:0005515
Lja1g4219 773 Pfam WD domain, G-beta repeat 44 78 IPR001680 GO:0005515
Lja1g4219 773 Pfam WD domain, G-beta repeat 669 704 IPR001680 GO:0005515
Lja1g4219 773 SUPERFAMILY WD40 repeat-like 40 704 IPR036322 GO:0005515
Lja1g4219 773 MobiDBLite consensus disorder prediction 563 582 - -
Lja1g4219 773 PANTHER WD REPEAT DOMAIN-CONTAINING FAMILY 23 772 IPR045151 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4219 Lja-Chr1 53919598 53932451 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4219 K11807 - gmx:100793917 1276.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4219 1 53919598 53932451 Lja1g4219 1 53919598 53932451 ECH