Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4209 ATGCCTTCATCAATAGTGAAGGGAAGAAGGAGCATGACATCGACACTCACACTAACATCTCTATTCCTCACACATTCCCTCTCTCAAACCCATAAAACCGCCACCATCCACACCCTCTCTCCCTCTTCTCTCCGCCACCGCAACCCCCTCTTTCAATTCTTCTCCGGTATTCTCAGGCCTTCAAGGATTCGACCAATTTCGACTGCGAAAGCTGCTTCGGTTCAAACCATGGCGAGCGTCGTCGATTCTGACTCTGTGACTTACCTCGCGCAGCGAGAAGCTGCTGAGATTGATGAAACTCTCATGGGTCCTCTTGGCTTCAGTGTCGATCAGCTCATGGAACTGGCTGGTTTGAGTGTCGCTACCTCCATTTCTGAGGTTTACAAACCAAGTGAGTATAGTCGTGTTCTTACTATCTGTGGTCCTGGTAACAATGGTGGTGATGGTCTTGTTGCTGCCCGGCATCTTCATCACTTTGGTTATAAGCCCTTGGTCTGTTACCCGAAGCGTACCCCGAAGCCTCTTTATGCTGGGTTAGTTACTCAGCTTGAAGCGCTTTCAATCCCGTTCTTGGCAGTGGAAGATCTACCGTCTGATTTATCAAATGACTTTGACATTCTGGTGGATGCGATGTTTGGATTCTCATTTCATGGTTCTCCGAGGCCTCCTTTTGATGATTTGATCCAAAGACTGGTTTCTCTAAATAATTATAATCAAAATGGCCAAAAAAGACCAGTTATAGTCTCTATAGATATTCCCTCTGGGTGGCATGTTGAAGAGGGAGATGTTGATGGTACAGGAATTAAACCGGATATGTTGGTTTCTCTGACAGCCCCAAAATCATGCGCGAAGAAGTTTGGTGGTCCTCACCACTTTCTAGGAGGTAGATTTGTGCCTCCTGCTATTGCAGAAAAGTATAAGCTTATACTTCCACCATATCCTGGAACATCCATGTGTGTCCGAATCGGAAAGCCTCCTCAGATTGATATTTCAGCTCTAAGAGAGAACTATATCTCCCCAGAATTTCTTGAAGAGGAGGTGGAGGCAGATCCCATTAATCAGTTTCGTAAGTGGTTTGATGATGCGGTAGTTGCTGGTTTGAAGGAACCGAATGCTATGTCCTTGTCAACTGTAGGGAAGGATGGAAAACCCTCATCACGAATGGTATTGCTAAAAGGCGTGGACAAGGATGGATTTGTGTGGTACACAAATTATGGAAGTCAAAAGGCACGTGAATTATCCGAAAATCCACATGCAGCACTTCTCTTTTACTGGGATGGTTTAAACCGACAGGTACGAGTGGAAGGATCCGTTGAGAAAGTCCCTGAAGAAGAATCAGAACAGTATTTCCATAGCCGTCCTAGAGGAAGTCAGATAGGAGCAATAGTCAGCAAGCAGAGTTCTGTAGTGCCTGGTAGGCATGTTCTTTATGAGGAGTACAAAGAGCTGGAACAAAAATTTGCTGATGGAAGTTTGATCCCGAAACCTAAGAGCTGGGGAGGATACAGGCTAACTCCAAAACTTTTTGAATTTTGGCAAGGACAGAAGTCTCGCTTGCATGACAGGTTGAGATATGTTCCCCATGAGATCAATGGACAGCGACTGTGGAAGGTTGAGCGATTGGCCCCCTGA 1632 0.4577 MPSSIVKGRRSMTSTLTLTSLFLTHSLSQTHKTATIHTLSPSSLRHRNPLFQFFSGILRPSRIRPISTAKAASVQTMASVVDSDSVTYLAQREAAEIDETLMGPLGFSVDQLMELAGLSVATSISEVYKPSEYSRVLTICGPGNNGGDGLVAARHLHHFGYKPLVCYPKRTPKPLYAGLVTQLEALSIPFLAVEDLPSDLSNDFDILVDAMFGFSFHGSPRPPFDDLIQRLVSLNNYNQNGQKRPVIVSIDIPSGWHVEEGDVDGTGIKPDMLVSLTAPKSCAKKFGGPHHFLGGRFVPPAIAEKYKLILPPYPGTSMCVRIGKPPQIDISALRENYISPEFLEEEVEADPINQFRKWFDDAVVAGLKEPNAMSLSTVGKDGKPSSRMVLLKGVDKDGFVWYTNYGSQKARELSENPHAALLFYWDGLNRQVRVEGSVEKVPEEESEQYFHSRPRGSQIGAIVSKQSSVVPGRHVLYEEYKELEQKFADGSLIPKPKSWGGYRLTPKLFEFWQGQKSRLHDRLRYVPHEINGQRLWKVERLAP* 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4209 543 ProSiteProfiles YjeF N-terminal domain profile. 94 310 IPR004443 -
Lja1g4209 543 Pfam Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region 499 543 IPR019576 -
Lja1g4209 543 SUPERFAMILY FMN-binding split barrel 343 543 - -
Lja1g4209 543 Pfam Pyridoxamine 5'-phosphate oxidase 359 445 IPR011576 -
Lja1g4209 543 TIGRFAM yjeF_nterm: YjeF family N-terminal domain 91 285 IPR004443 -
Lja1g4209 543 Gene3D - 85 327 IPR036652 -
Lja1g4209 543 PANTHER NAD(P)H-HYDRATE EPIMERASE 82 528 IPR032976 -
Lja1g4209 543 TIGRFAM pdxH: pyridoxamine 5'-phosphate oxidase 326 543 IPR000659 GO:0004733|GO:0008615|GO:0010181
Lja1g4209 543 PANTHER NAD(P)H-HYDRATE EPIMERASE 82 528 - -
Lja1g4209 543 Hamap NAD(P)H-hydrate epimerase [nnrE]. 90 325 IPR004443 -
Lja1g4209 543 Gene3D - 337 534 IPR012349 -
Lja1g4209 543 ProSitePatterns Pyridoxamine 5'-phosphate oxidase signature. 509 522 IPR019740 GO:0016638
Lja1g4209 543 SUPERFAMILY YjeF N-terminal domain-like 88 317 IPR036652 -
Lja1g4209 543 Pfam YjeF-related protein N-terminus 110 282 IPR004443 -
Lja1g4209 543 Hamap Pyridoxine/pyridoxamine 5'-phosphate oxidase [pdxH]. 336 543 IPR000659 GO:0004733|GO:0008615|GO:0010181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4209 K23998 - gmx:100795497 911.368
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4209 1 53746613 53751757 Lja1g4209 1 53746613 53751757 ECH