Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4175 ATGGAGACAACAAATTCACCACCCCCTCTTCAAATTCAGCCTCCCACTTATGGAAACTTGGTCACTGTTCTCAGCATCGATGGCGGTGGTATCAGGGGTATTATTCCAGCAACTATCCTCGAATTCCTTGAAGCACAACTCCAGGAGTTGGATGGTGAGTCCGCAAGGCTTGCAGATTACTTTGATGTGATTGCAGGAACAAGCACCGGTGGCCTTGTAACCGCCATGCTAAGCGCTCCAAATGATAAAAAACGTCCACTTTTTGCGGCCAAGGACATCAAGCCCTTTTACTTTGAACATGGCCCCAAGATTTTCCCACAACACAAGGGCCTGTTGGCAACAATAGGAAATTTGTTTGGAACATTAGGAGGACCAAAATACGATGGGAAGTACCTTCATAAGGTGGTGAAGGAGAAGTTGGGGGAAACTCGTGTGCATGACACACTGACAAATGTTGTGATCCCCACCTTTGACATCAAGACAATGCAACCGACTGTTTTCTCTTCTTATAAAATCAAGACGTCCCCTTGCTTGGATGCTCAACTCGCTGACATATGCATCAGCACCTCCGCCGCGCCTACTTATCTCCCCGCCTACTCTTTCAGCAACAAAGGCTCCGATGGAAACGTGCAGGAATTCAACCTTGTTGATGGTGGTATTTGTGCAAACAATCCGACTCTAGTAGCTGTGAATGAAGTAACCAAGCAAAGCCTTCTTGAAAACCCTGACTTCTTTGCCATCAAGGCTGTGGAATATAGTCGGTTCCTGATAATCTCACTGGGCACAGGGACAGCAAAAAATGAAATGAAGTTCAATGCAAAAATGGCAGCTAAATGGGGTCTATTGGATTGGTTAACCAGCGGTGGTTCAACACCCTTGATTGACATGTTTAGTCAATCATCTGGTGATATGGTCGATTTTCATCTTTCTACTGTCACTCAAGCACATCATTCAGAAGATAATTATCTCCGGATACAGGATGATACATTGGCAGGTACGGATTCTTCCGTTGATATCTCAACAAAAGAGAATTTGGAAAGGCTGAGCCAAATTGGTATTAGTTTGTTGAAGAAACCAGTATCTAAGGTCAATTTAGACTCTGGTCTATGTGAAACAATGCCAAATGCGGAAACCAATGAAGATGCTCTCAAAAGCATTGATGGGGGTGGTATTAGGGGCATTATTCCTGCAACTATTCTCGAATTCCTTGAAGCACAACTTCAGGAGTTGGATGGTGAGTCTGCAAGGCTTGCAGATTACTTCGATGTGATTACAGGGACAAGCACGGGCGGACTTGTAACCGCCATGTTAAGTGCTCCAAATGATAAACAGCGTCCACTTTTTGCAGCAAAGGACATCAAACCCTTTTACTTGGAACATTGCCCCATGATCTTCCCACAACACAGGGGGCCTTTGGTATCGATAAGAAATTTGTTCAAGACAATAGGAGGACCAAAATACAATGGGAAGTACCTTCATAAGGTGGTGAAGGAGAAGCTTGGGGAAATTCGTGTGCATGAGACACTCACCAATGTTGTGATTCCCACTTTTGACATCAAAACAATGCAACCAACCATTTTCTCTTCTTATAAGATCAAGAGTTCCCCTTGCTTGGATGCTCAACTCTCTGATATATGCATTAGCACCTCTGCTGCACCTACTTATCTTCCCGCCTACCCTTTCAAGAACCAAGACTCTGAAGGGAATGTGCAAGAATTCAACCTTATTGATGGCGGTGTTTGTGCGAATAATCCGACTCTAGTAGCTGTGAATGAAGTAACAAAGCAGATCATTAATCAACATCCTGACTTCTTTTCCATCAAGCCCATGGAATATGGTCGGTTCTTGATAATCTCACTAGGCACAGGGACAGCCAAGAATGAACAGAAGTTCAATGCAAAAATGGCAGCCAAATGGGGTCTATTGGATTGGTTAACCAAAAGTGGTTCTACTCCATTGATCGAATTGTTTACTCAATCATCTGGTGATATGGTTGATTTTCATCTTTCAACTGTTACTCAAGCACTTAATTCCCAAGACAATTACCTCCGGATACAGGATGATACGTTGGTGGGTACAGACTCTTCAGTTGATGTCGCCACAAAAGAGAATTTGGAAAGATTGAGTCAAATTGGTGAAAAATTGTTGAAGAAACCTGTATCTAAGGTCAATTTAGACAATGGTGATTTGTTTGTGCCGGTTGAAAATAGGGAGACCAATGAAGATGCTCTCAGAAGGAGACTCCGAGAAATGAAGTCGCCTCACACTAAAAAGGCATTTGCATTGTGA 2289 0.4334 METTNSPPPLQIQPPTYGNLVTVLSIDGGGIRGIIPATILEFLEAQLQELDGESARLADYFDVIAGTSTGGLVTAMLSAPNDKKRPLFAAKDIKPFYFEHGPKIFPQHKGLLATIGNLFGTLGGPKYDGKYLHKVVKEKLGETRVHDTLTNVVIPTFDIKTMQPTVFSSYKIKTSPCLDAQLADICISTSAAPTYLPAYSFSNKGSDGNVQEFNLVDGGICANNPTLVAVNEVTKQSLLENPDFFAIKAVEYSRFLIISLGTGTAKNEMKFNAKMAAKWGLLDWLTSGGSTPLIDMFSQSSGDMVDFHLSTVTQAHHSEDNYLRIQDDTLAGTDSSVDISTKENLERLSQIGISLLKKPVSKVNLDSGLCETMPNAETNEDALKSIDGGGIRGIIPATILEFLEAQLQELDGESARLADYFDVITGTSTGGLVTAMLSAPNDKQRPLFAAKDIKPFYLEHCPMIFPQHRGPLVSIRNLFKTIGGPKYNGKYLHKVVKEKLGEIRVHETLTNVVIPTFDIKTMQPTIFSSYKIKSSPCLDAQLSDICISTSAAPTYLPAYPFKNQDSEGNVQEFNLIDGGVCANNPTLVAVNEVTKQIINQHPDFFSIKPMEYGRFLIISLGTGTAKNEQKFNAKMAAKWGLLDWLTKSGSTPLIELFTQSSGDMVDFHLSTVTQALNSQDNYLRIQDDTLVGTDSSVDVATKENLERLSQIGEKLLKKPVSKVNLDNGDLFVPVENRETNEDALRRRLREMKSPHTKKAFAL* 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4175 762 PANTHER PATATIN 385 758 - -
Lja1g4175 762 PANTHER PATATIN 10 384 - -
Lja1g4175 762 CDD Pat17_isozyme_like 392 728 - -
Lja1g4175 762 ProSiteProfiles Patatin-like phospholipase (PNPLA) domain profile. 24 230 IPR002641 GO:0006629
Lja1g4175 762 PANTHER XYLOSE ISOMERASE 385 758 - -
Lja1g4175 762 PANTHER XYLOSE ISOMERASE 10 384 - -
Lja1g4175 762 CDD Pat17_isozyme_like 18 368 - -
Lja1g4175 762 ProSiteProfiles Patatin-like phospholipase (PNPLA) domain profile. 384 590 IPR002641 GO:0006629
Lja1g4175 762 Coils Coil 40 60 - -
Lja1g4175 762 Coils Coil 400 420 - -
Lja1g4175 762 Pfam Patatin-like phospholipase 386 589 IPR002641 GO:0006629
Lja1g4175 762 Pfam Patatin-like phospholipase 24 229 IPR002641 GO:0006629
Lja1g4175 762 SUPERFAMILY FabD/lysophospholipase-like 385 726 IPR016035 -
Lja1g4175 762 Gene3D Cytosolic phospholipase A2 catalytic domain 12 385 - -
Lja1g4175 762 Gene3D Cytosolic phospholipase A2 catalytic domain 386 759 - -
Lja1g4175 762 SUPERFAMILY FabD/lysophospholipase-like 20 369 IPR016035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4175 Lja-Chr1 53145067 53157653 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4175 363 757 Miscellaneous Gene Families AT2G26560 59.158 3.11e-166 484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4175 - - gmx:100783909 625.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4175 1 53145067 53157653 Lja1g4175 1 53145067 53157653 ECH