Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4172 ATGAAGAAGGTATTGGTGACCAGTGCATCCGGTTACCTCGGAGGAAGGCTCTGTGACGCTCTTCTCCGACAAGGTTACTCTGTCAGAGTCCTCGCTAGACGCACTAGCGATCTCTCCGTGCTTCCAGCCCCTTCCGAAATCTTCTACGGCGACATCACCGACTTACCCTCTCTCATCGCCGCCGTCTCCGGTTGCTCCGTCGTCTTCCACCTCGCCGCTCTCGTTGAGCCCTGGCTCCCCGATCTCTCTAAAATCTTCACTGTTAACGTTGGAGGATTGAAAAATGTGTTGGAGGCGATGAAGCAGAGAAACACGGTGGAGAAGCTCATATTCACGTCGTCAATTATGGCTTTTGGACCAACTGATGGAATCATTGCCGATGAGAATCATAGCCATCACGAGAGATTTTTCTGCACTGAGTATGAGAAATCAAAGGTTGCTGCTGACAAGATTGCATTACAAGCTGCATCCGAGGGTGTGCCAATATTGGTGCTTTATCCTGGGTTAATCTATGGGCCTGGCAAGGTCACACGAGGAAACGTTGTTGCAAGGACGCTTGTAGAACGTTTTTGTGGTCGATTACCTGGTTACATAGGCAATGGGAGTGATAGAATATCGTTCAGCCATGTTGATGATGTGGTGGAGGGTCACATTGCAGCAATGGAGAAAGGAGAGCTTGGGAATAGGTATCTGCTCACGGGTGAAACTGCATCATTCAACCAAGTTTTTGACATGGCTGCTATGATTACTAATACTAAAAGACCAATGATCAGCATCCCTTTGTGGGTTATTTTAGTATATGGTTGGATATCAGTTTTATTTTCTCGCATCACCGGAAAGTTACCCTTCATCACACCACAGTATTCATGCGAGAAAGCTAAAAGAGAGCTGGATTATAATCCCAGAAGCCTAAGCGATGGACTTGCGGAGGTACTGCTCTGTTTGAAGAACGCGGGATTAATCAAATATTATTGGAACACTCCAAGCACTCAAGCAGTAACATAG 1005 0.4687 MKKVLVTSASGYLGGRLCDALLRQGYSVRVLARRTSDLSVLPAPSEIFYGDITDLPSLIAAVSGCSVVFHLAALVEPWLPDLSKIFTVNVGGLKNVLEAMKQRNTVEKLIFTSSIMAFGPTDGIIADENHSHHERFFCTEYEKSKVAADKIALQAASEGVPILVLYPGLIYGPGKVTRGNVVARTLVERFCGRLPGYIGNGSDRISFSHVDDVVEGHIAAMEKGELGNRYLLTGETASFNQVFDMAAMITNTKRPMISIPLWVILVYGWISVLFSRITGKLPFITPQYSCEKAKRELDYNPRSLSDGLAEVLLCLKNAGLIKYYWNTPSTQAVT* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4172 334 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 4 323 - -
Lja1g4172 334 PANTHER NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN 4 323 - -
Lja1g4172 334 Pfam NAD dependent epimerase/dehydratase family 4 229 IPR001509 -
Lja1g4172 334 Gene3D - 1 322 - -
Lja1g4172 334 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1 311 IPR036291 -
Lja1g4172 334 CDD AR_FR_like_1_SDR_e 4 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4172 Lja-Chr1 53110537 53113583 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4172 2 242 Miscellaneous Gene Families AT1G09510 30.798 4.56e-20 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4172 K15891 - gmx:100792747 490.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4172 1 53110537 53113583 Lja1g4172 1 53110537 53113583 ECH