Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4163 ATGGATGATGTTGAAGATAAGCTGCCTCCTGACACATCTTCAAAAATTGCTGAAGAGAAGTTTCTTTCAGAAAATGTTGAGGACAAGATACCCTCTCAATCCTCTTCAAATATTGCTTTAGAGACACCACTTGCAGAACATTTTGAATTCAAGGTTCCCTCTGAGCCCTCTTCGACAATTGCTGCTGTAGAGACACCACAGGCAGACCATGTTGAAGACAAGATACCCTCTGAATCCACTTCAAATATTGCTTTAGAGACACCACTGGTAGAACATGTTGAAGACAAGCTTCCGTCTGAATCCTCTTCGACAATTGCTTTTGTAGAGATACCACAGGCGGACCAAGTTGAAGACAAGCTACCCTCTGAGTCCTCTTCAAAAATTTCTGTAGAGACACCACTGGCTGAACATGGTGAAGACAAGCTATCCTCTATGCCCTCTTTCAAATTTCCTGTAGAGATGCCACTGGCTGAACCATCTGAAGAAAATTCTGAAGTGGTAAACCTGGCAGGTAATCCATTTTCCATTGAAGCTCCAATAAACCCACTTAGCAATGGAAAAGTGGAGCCTGACACTCATTTGCCAGTGAATGAGTTGTCTGAATCAGCTGAGTCACCTAACTCAGCTTCAATTTCGACTACGGTAGATGTAACAGAAAGTAGCTACCAAGTACCTCTGGTTGAAGATCCTGTACCAATTGCTGCAGAAAATGTCTCTTACAATCATGAAATGAAGGATGATGTTACTGACGTCAGTTCTGCTGATAATGAGATTAGGCTCTCGGCTTCCTCTTCTGAAACAAAAGATTTGCAAAAAAATCACAATGAACTTAATATAGATGAGGGAACAATTGACGCACCCAAGCTGGTTGACGCAAATAGAGGCCTTATTGATACTGCAGCACCATTTGATTCTGTCAAGGAAGTTGTTTCCAAGTTTGGAGGAATTGTGGATTGGAAGGCTCACAGAATCAAGACTGTGGAGAGACGTACTCTTGTAGAACAAGAACTTGAAAAAGCAAACGAAGAGATCCCAGAGTACAGAAAACAAGCAGAGGCTGCTGAACAGGGAAAAGTTCAAGTACTAAAGGAGCTGGATAGCGCCAAGAGATTAATAGAGGAATTAAAAGTCAACCTAGAGAGGGCACAAACAGAAGAGCGTCAAGCAAGGCAAGACTCTGAACTTGCAAAGCTCAGAGTGGAAGAGATGGAGCAGGGTATTGCAGATGAATCGAGTGTTGCAGCCACAGCACAACTTGAAGTTGCTAAAGCTAGATATTCAGCAGCAATTTCAGATTTAATAGCTGTGAAAGAGGAACTGGAAGCATTGCGTAAGGAATACGCTTGCTTGGTGACTGATAGAGATGTAGCTATTACGAAAGCTGAAGAGGCTGTTGCCGCATCAAAGGAAGTGGAGAAGTCAGTGGAGGATTTAACTATTGAACTAATTGGTGCAAAAGAGTTATTGGAGACTGCACATGCCGCACACTTGGAAGCAGAAGAACAAAGAATAGGAACAGTCATGGCGAGAGATCAAGATTCTCTCAATTGGGAGAAGGAACTTAAACAGGAAGAAGAAGAGCTCCAGAGACTCAACCAGAAAGTTTCGTCTGCGAAGGAACTCAAGTCTAAACTGGAAACAGCCTCTGCTCTACTGCTTGATTTGAAAGCTGAACTAACTGCTTATATGGAATCAAAGTTAAAGCAGGAAGGTGATGAAGAAGGAGTCTCAAAAGGAGGCCTAGAAGAACCAGAGAAGACGACACACACTGATATCCAAGCAGCAGTGGCATCAGCTAGAAATGAGCTTGAGGAAGTAAAGCTTAACATAGAGAAAGCAAATGCGGAGGTTAGTTTCTTGAAGGTAGCGGCTACATCATTAAAATCAGAACTTGAGCAAGGAAAATCAACTCTTGCCTCAATCAGGCAAAGAGAGGGAATGGCCTCCATTGCAGTTGCATCTCTTGAAGCTGAATTGGACCAGACTAGATCAGAAATAGCTTTGGTTCAGATGAAGGAGAAAGAAGCCAAAGTGGAAATGACTGAGCTTCCCAAAAAGCTTCAACTAGCAGCTGAAGAAAATAACCAGGTCAACTTGCTTACTCAAGAAGCTCGTGAAGTGCTGCAGAAAGCAAAGGCAGAAGCAGAGCAAGCCAAGGCTGGAGTAAGTACCTTGGAAAGTAGATTACATGCAGCTCAAAAGGAGATAGAGGCTGCAAAAGCTTCTGAAAAGTTGGCAATAGAAGCAATTAAAGCATTGCAGGAGAGTGAATCAACTAGAAGCAAAAATGAAATTGACCCATCTACTGGGGTAACACTTTCTTTGGAGGAGTACTATGAGCTTAGCAAACGGGCTCATGAGGCAGAAGAGCGAGCCAATAAGAGGGTTGCAGATGCTAATTCCGAAATTGAGATAGCTAAAGAGTCTGAATTGAAATCTTTTGAGAAGTTGGATGAAGTGAATAGAGAGATAGCTGCTAGAAGGGAATCTTTGAAGATAGCCATGGAAAAGGCTGAGAAGGCAAAGGAAGGTAAATTAGGTGTAGAACAAGAATTAAGAAAGTGGAGAGCAGAAAATGAGCAGCGAAGAAAGGCTGGTGAATCTGGCCATGGAGTGCTAAACCAGAATAAAAGCCCTAGGGGTAGTTTTGAGGGGATTAAGGAAACAAATTATTTTGACCGGGCTCACGGTGCAGCTAGTCCTGCACATAACATGTCAAGTCCAGAGGCCTATGAACATGAAGGCAATGATGAAAATGGATCATCATCCCCAGAATTAAAACATGGAAAGAAGAAGAAAAGATCATTGTTCCCTCGGGTTTTGATGTTCTTTGCTAGAAGAAAAACACATTCAGCCAAGTCAGGGTAA 2868 0.4257 MDDVEDKLPPDTSSKIAEEKFLSENVEDKIPSQSSSNIALETPLAEHFEFKVPSEPSSTIAAVETPQADHVEDKIPSESTSNIALETPLVEHVEDKLPSESSSTIAFVEIPQADQVEDKLPSESSSKISVETPLAEHGEDKLSSMPSFKFPVEMPLAEPSEENSEVVNLAGNPFSIEAPINPLSNGKVEPDTHLPVNELSESAESPNSASISTTVDVTESSYQVPLVEDPVPIAAENVSYNHEMKDDVTDVSSADNEIRLSASSSETKDLQKNHNELNIDEGTIDAPKLVDANRGLIDTAAPFDSVKEVVSKFGGIVDWKAHRIKTVERRTLVEQELEKANEEIPEYRKQAEAAEQGKVQVLKELDSAKRLIEELKVNLERAQTEERQARQDSELAKLRVEEMEQGIADESSVAATAQLEVAKARYSAAISDLIAVKEELEALRKEYACLVTDRDVAITKAEEAVAASKEVEKSVEDLTIELIGAKELLETAHAAHLEAEEQRIGTVMARDQDSLNWEKELKQEEEELQRLNQKVSSAKELKSKLETASALLLDLKAELTAYMESKLKQEGDEEGVSKGGLEEPEKTTHTDIQAAVASARNELEEVKLNIEKANAEVSFLKVAATSLKSELEQGKSTLASIRQREGMASIAVASLEAELDQTRSEIALVQMKEKEAKVEMTELPKKLQLAAEENNQVNLLTQEAREVLQKAKAEAEQAKAGVSTLESRLHAAQKEIEAAKASEKLAIEAIKALQESESTRSKNEIDPSTGVTLSLEEYYELSKRAHEAEERANKRVADANSEIEIAKESELKSFEKLDEVNREIAARRESLKIAMEKAEKAKEGKLGVEQELRKWRAENEQRRKAGESGHGVLNQNKSPRGSFEGIKETNYFDRAHGAASPAHNMSSPEAYEHEGNDENGSSSPELKHGKKKKRSLFPRVLMFFARRKTHSAKSG* 956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4163 955 Coils Coil 789 809 - -
Lja1g4163 955 MobiDBLite consensus disorder prediction 566 589 - -
Lja1g4163 955 Coils Coil 426 453 - -
Lja1g4163 955 Coils Coil 330 401 - -
Lja1g4163 955 MobiDBLite consensus disorder prediction 1 37 - -
Lja1g4163 955 MobiDBLite consensus disorder prediction 115 146 - -
Lja1g4163 955 Coils Coil 652 672 - -
Lja1g4163 955 Pfam Weak chloroplast movement under blue light 294 862 IPR008545 -
Lja1g4163 955 Coils Coil 461 481 - -
Lja1g4163 955 Coils Coil 817 858 - -
Lja1g4163 955 PANTHER WEB FAMILY PROTEIN-RELATED 276 950 - -
Lja1g4163 955 MobiDBLite consensus disorder prediction 566 590 - -
Lja1g4163 955 MobiDBLite consensus disorder prediction 857 939 - -
Lja1g4163 955 MobiDBLite consensus disorder prediction 910 926 - -
Lja1g4163 955 MobiDBLite consensus disorder prediction 7 26 - -
Lja1g4163 955 Coils Coil 589 630 - -
Lja1g4163 955 MobiDBLite consensus disorder prediction 54 83 - -
Lja1g4163 955 Coils Coil 514 558 - -
Lja1g4163 955 PANTHER HEAVY CHAIN, PUTATIVE, EXPRESSED-RELATED-RELATED 276 950 - -
Lja1g4163 955 Coils Coil 690 742 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4163 Lja-Chr1 53039529 53045449 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4163 - - gmx:100812902 1248.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4163 1 53039529 53045449 Lja1g4163 1 53039529 53045449 ECH