Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4161 ATGGGTGCCACTCAGAGTCGCGACGATTTGCTCGAATCCTCCGATTCCGATCGCGAAGAAGCAGAAGACGCAAACTACCAAGACGCCGCCAGCGACGATTCAGAACGGCGAGTCAAAACGCCACCGTCGCTCGATGATGTCGAGGCCAAGCTCAAGGCCCTCAAGCTCAAATACGCTTCTTCTTCATCTTCCTCCGCTGCTTTGGCCCCCAACGCTGTCAAGCTCTACCTCCATATCGGTGGAAACACCCCCAATGCCAAGTGGGTAACCTCCGACAAACTCACTTCGTACAATTTCGTCAAGACCCACCGGATCGACGGTGACTCTGCGGAAGAGGATGAGGAAGAAGAAGAAGAGGAGGAGGATGAGGAGGAAGAATCTTGGTGGGTTTTGAAGGTGGGATCCAAGGTTCGGTCCAAGGTGGGATTGGATATGCAATTGAAGACGTTCTCCGATCAGCGGCGCGTGGATTTCGTCGCGCGTGGCGTCTGGGCTATGAAATTCTTCACGGAGCAAGACTACAGTGCCTTCGTGGTTCAGTTTCAGAACTGCTTGTTTGAGAATACGCACGGCGTTGAGGCCACGGAGGAGAACAGGCTCAAGGTTTACGGCAAGGATTTCATTGGGTGGGCGAATCCTGAAGCTGCTGATGATTCCATGTGGGAGGACGCGGAGGATAGGTTCTCTAAAAGCCCCGGTTCCGCCACGCCGGTTCGGCCGAGTCAGGATCTCCGGGAGGAGTTTGAGGAAGCTGCGAATGGTGGGATTCAGAGCATTGCGCTTGGTGCTTTGGACAACAGTTTCTTGGTGGGTGAAAATGGTATTCAGGTTGTGAAGAATTTTGCTCATGGGATTCATGGGAAGGGTGCTTTTGTGAATTTTCGTGATGGGTACCAGAATGAGTCATCGTCGCATTGTACCCCCAAGAAGACGCTTCTGATGAAAGCGGAGACGAACATGCTTCTGATGAGTCCTGCCGGTGAGGGTAAGCTTCATTCAATGGGGCTTCACCAGCTTGATATTGAGACTGGGAAGGTTGTGACTGAGTGGAAGTTTGGGAAGGATGGAACTGAGATTACGATGAGGGATATCGCGAATGATAGCAAAGGTGCTCAGTTGGATCCTTCAGGATCAACTTTCTTAGGGTTGGATGATAACAGGCTTTGTAGGTGGGACATGCGTGATCGCAATGGGATGGTTCAGAATATTGCGAATTCGAACACTCCTGTGTTGAATTGGGCACAAGGGCATCAGTTTTCGAGGGGGACTAGCTTTCAATGCTTTGCCACTACTGGTGATGGTTCCATTGTTGTTGGGTCTCTTGATGGGAAGATTCGTCTCTATTCAATCAACTCCATGAGGCAGGCAAAGACAGCTTTTCCTGGCCTCGGATCGCCTGTTACTCACGTGGATGTTACCTTTGATGGCAAGTGGATTGTGGGCACAACGGATTCCTACTTGATTGTTATTTGTACCATGTTTACTGACAAAGATGGTAAGTTTAAAACTGGTTTCGCTGGACGAATGGGAAACAAGATTGCTGCTCCAAGGTTGCTCAAGCTCAACCCTCTGGATTCACATTTAGCTGGAGTAAATAACAAATTCCGCAATGCTCAGTTTTCTTGGGTCACGGAGAATGGAAGGCAGGAGCGACATATAGTAGCTACAGTGGGAAAGTTCAGTGTGATATGGAACTTCCAGCAAGTCAAGGACGGTTCTCATGATTGTTACCATAACCAACAGGGTCTAAAGAGCTGCTACTGCTACAAAATAGTCCTTAGGGATGATTCCATTGTTGAAAGCCGATTTATGCACGACAAGTTTGCAGTCAGTGATTCTCCTGAGGCTCCATTGGTAATAGCCACCCCACTGAAAGTTAGCTCATTCAGCATGTCCAGCAGGAGATGA 1908 0.4948 MGATQSRDDLLESSDSDREEAEDANYQDAASDDSERRVKTPPSLDDVEAKLKALKLKYASSSSSSAALAPNAVKLYLHIGGNTPNAKWVTSDKLTSYNFVKTHRIDGDSAEEDEEEEEEEEDEEEESWWVLKVGSKVRSKVGLDMQLKTFSDQRRVDFVARGVWAMKFFTEQDYSAFVVQFQNCLFENTHGVEATEENRLKVYGKDFIGWANPEAADDSMWEDAEDRFSKSPGSATPVRPSQDLREEFEEAANGGIQSIALGALDNSFLVGENGIQVVKNFAHGIHGKGAFVNFRDGYQNESSSHCTPKKTLLMKAETNMLLMSPAGEGKLHSMGLHQLDIETGKVVTEWKFGKDGTEITMRDIANDSKGAQLDPSGSTFLGLDDNRLCRWDMRDRNGMVQNIANSNTPVLNWAQGHQFSRGTSFQCFATTGDGSIVVGSLDGKIRLYSINSMRQAKTAFPGLGSPVTHVDVTFDGKWIVGTTDSYLIVICTMFTDKDGKFKTGFAGRMGNKIAAPRLLKLNPLDSHLAGVNNKFRNAQFSWVTENGRQERHIVATVGKFSVIWNFQQVKDGSHDCYHNQQGLKSCYCYKIVLRDDSIVESRFMHDKFAVSDSPEAPLVIATPLKVSSFSMSSRR* 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4161 635 Gene3D - 321 559 IPR015943 GO:0005515
Lja1g4161 635 Pfam VID27 C-terminal WD40-like domain 264 578 IPR013863 -
Lja1g4161 635 PANTHER DEM PROTEIN 1 635 - -
Lja1g4161 635 MobiDBLite consensus disorder prediction 109 126 - -
Lja1g4161 635 SUPERFAMILY Putative isomerase YbhE 335 533 - -
Lja1g4161 635 MobiDBLite consensus disorder prediction 23 45 - -
Lja1g4161 635 PANTHER VACUOLAR IMPORT AND DEGRADATION PROTEIN 27 1 635 IPR040458 -
Lja1g4161 635 MobiDBLite consensus disorder prediction 221 240 - -
Lja1g4161 635 Coils Coil 107 127 - -
Lja1g4161 635 MobiDBLite consensus disorder prediction 105 126 - -
Lja1g4161 635 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4161 Lja-Chr1 53033545 53037052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4161 1 635 Acyl Lipid Metabolism Gene Families AT3G19240 64.177 0.0 836
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4161 - - gmx:100810233 1002.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4161 1 53033545 53037052 Lja1g4161 1 53033545 53037052 ECH