Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4160 ATGAAGTGGGCTTCCAACAGAAACATAGCTGCTTTCAAACCCAATTTGTCCTTGTTTCACTTTCACTCCCTGTTCCAAAATGCAAGGTGTGCACTTGTTACCTTTCGCCAACTTTTACAAGCAAATTATAACCCCAACGATGTTACTTTCTCATTACTCATCAAAGCTTGTCTTTCCTCTTCTTTTGCTTTTGGTTCATCAACCTCTGAGCAAAAAGCAAGCCAGATTCATACCCAGTTGGCGAAACGAGGCGTAAACCAATTCCTTTATGTAAATACTGCTCTCATTGACTTGTACATGAAACTTGGGTTCACCTCTCATGCACACCAACTGTTTGAAGATATGATTTATAGAGATGTTGTATCATGGAACGTGATGATTTGTGGATATTCACAAAATGGGTATCCTTATGACGCTCTTCAACTCTTTGTACACATGCTAAGACAGAATTTCAGACCTAATCAAACAACCATTGCTAGTTTACTACCTTCTTGTGGTATTCGTGAACTGATTCTTCAAGGTAGGTCCATTCATGGGTTTGCATTCAAAGCTGGCCTTGGTTGGGATACTCAATTGAATAATGCCCTTATCTCAATATATGCTAAATATGATGATTTGGAAGCAGCCCAAGTCTTATTTGAAGGAATGGATGGGAAGAATGTTGTCTCTTGGAATACCATGATTGGTGCCTATGGCCAAAATGGTCTTTCGAATAAGGCTGTGCTTTGCTTCAAAGAGATGCTGAAGGAAGGTTTGCAACCTAGTCAAGTGACTATGATGAACCTTATTTCGGCAAATGCAGTTCCTACAATTGTCCATTGTTGTATTATCAAATGTGGCTTCATCAATGATGCTTCTGTTGTTACTTCACTGGTTTGTCTATATGCAAAGCAAGGATTCACAGAGATGGCAAAACTGCTTTACAAATATTATCCCACAAAAGACCTGATTACGTTGACAGCTATGACCTCTAGCTATTCTGAAAAAGGTGACATAGAGTCTGCAGTTGAGTGTTTTATCCGAACTCTGCGGTTAGACATAAGACCGGATGCAATTGCCTTGATCAGTGTCCTTCATGGAATTGAAGATCCTTCTCATTTTGCTATTGGACGTGCTTTCCATGGTTATGGGCTGAAGTGCGCGCTGTCTACTGATTGTTTAGTTGCAAATGGGCTAATAAGCATGTACTCAAGATTTGATGAGATAGAAGGCACTTTATTTTTGTTTTCCGAAATGAGTGAAAAACCACTGATTACTTGGAATTCTGTGATATCTGGCTGTGTGCAGGCTGGAAAATCAAGTAATGCCATGGAGTTATTCTCCAAAATGAACATGTATGGACAAAAACCAGATGCCATTACTATCGCTAGTCTGCTATCTGGGTGTTGCCAGCTCGGGAACCTGCGGACCGGAGAGACACTGCATGGCTATGTCCTGAGGAACAATGTGAAAATGGAAGAATTTACAGGCACTGCTCTAATAGACATGTACACCAAGTGTGGAAGATTAGATTATGCTGAAAAGGTATTTTACAGCATCAAGGATCCATGCTTGGCGACGTGGAACTCAATCATATCAGGTTATAGTTTATATGGACATGAACATAGAGCTTTCAAATGTTTTTCTGAACTGCTTGAACAAGGGCTAGAACCGGATAGAATCACTTTCCTGGGAGTTTTAGCAGCATGCACCCATAGTGGACTTGTCCATTTAGGAATGAAATACTACCGTATCATGACAGAAGAGTGTGGTTTGGTGCCAAGTTTGCAACATTATGCTTGCATAGTTGGTCTCTTGGGTCGAGCTGGCTTGTTCAAGGAAGCAATTGAATTCATTAACAGCATGGAGATTCGGCCTGATTCAGCTGTCTGGGGAGCTTTGTTAAGTGCTTGTTGCATCCAACAAGAGGTCAAGCTTGGGGAATGCTTGGCAAAAAAATTGTTTTTATTGAATTGCAACAATGGTGGATTTTATGTGTTGATCTCAAATCTTTATGCGATTGTGGGGAGGTGGGATGATGTAGCAAAGGTGAGGGATATGATGAGAGACAGTGGAGGAGATGGATGTTCTGGTGTTAGTGTTATTGAATTGACATCCATCAAAGACACCGATAACAACTTACGCCCAAATGAAGCCTATTTGAATTCAAGCACTTGGCAGAATTTGTGTCTATATTGA 2178 0.4063 MKWASNRNIAAFKPNLSLFHFHSLFQNARCALVTFRQLLQANYNPNDVTFSLLIKACLSSSFAFGSSTSEQKASQIHTQLAKRGVNQFLYVNTALIDLYMKLGFTSHAHQLFEDMIYRDVVSWNVMICGYSQNGYPYDALQLFVHMLRQNFRPNQTTIASLLPSCGIRELILQGRSIHGFAFKAGLGWDTQLNNALISIYAKYDDLEAAQVLFEGMDGKNVVSWNTMIGAYGQNGLSNKAVLCFKEMLKEGLQPSQVTMMNLISANAVPTIVHCCIIKCGFINDASVVTSLVCLYAKQGFTEMAKLLYKYYPTKDLITLTAMTSSYSEKGDIESAVECFIRTLRLDIRPDAIALISVLHGIEDPSHFAIGRAFHGYGLKCALSTDCLVANGLISMYSRFDEIEGTLFLFSEMSEKPLITWNSVISGCVQAGKSSNAMELFSKMNMYGQKPDAITIASLLSGCCQLGNLRTGETLHGYVLRNNVKMEEFTGTALIDMYTKCGRLDYAEKVFYSIKDPCLATWNSIISGYSLYGHEHRAFKCFSELLEQGLEPDRITFLGVLAACTHSGLVHLGMKYYRIMTEECGLVPSLQHYACIVGLLGRAGLFKEAIEFINSMEIRPDSAVWGALLSACCIQQEVKLGECLAKKLFLLNCNNGGFYVLISNLYAIVGRWDDVAKVRDMMRDSGGDGCSGVSVIELTSIKDTDNNLRPNEAYLNSSTWQNLCLY* 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4160 725 Pfam PPR repeat family 219 265 IPR002885 -
Lja1g4160 725 Pfam PPR repeat family 516 563 IPR002885 -
Lja1g4160 725 Pfam PPR repeat family 118 164 IPR002885 -
Lja1g4160 725 Pfam PPR repeat family 418 464 IPR002885 -
Lja1g4160 725 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 119 153 IPR002885 -
Lja1g4160 725 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 315 349 IPR002885 -
Lja1g4160 725 PANTHER OS07G0578800 PROTEIN-RELATED 310 723 IPR045215 GO:0003723|GO:0009451
Lja1g4160 725 Gene3D Tetratricopeptide repeat domain 177 270 IPR011990 GO:0005515
Lja1g4160 725 Gene3D Tetratricopeptide repeat domain 271 368 IPR011990 GO:0005515
Lja1g4160 725 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 517 551 IPR002885 -
Lja1g4160 725 PANTHER OS07G0578800 PROTEIN-RELATED 212 309 IPR045215 GO:0003723|GO:0009451
Lja1g4160 725 PANTHER OS07G0578800 PROTEIN-RELATED 51 218 IPR045215 GO:0003723|GO:0009451
Lja1g4160 725 Pfam E motif 636 696 IPR046848 -
Lja1g4160 725 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 220 254 IPR002885 -
Lja1g4160 725 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 51 218 - -
Lja1g4160 725 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 310 723 - -
Lja1g4160 725 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 212 309 - -
Lja1g4160 725 TIGRFAM PPR: pentatricopeptide repeat domain 121 154 IPR002885 -
Lja1g4160 725 TIGRFAM PPR: pentatricopeptide repeat domain 520 552 IPR002885 -
Lja1g4160 725 TIGRFAM PPR: pentatricopeptide repeat domain 418 452 IPR002885 -
Lja1g4160 725 TIGRFAM PPR: pentatricopeptide repeat domain 222 255 IPR002885 -
Lja1g4160 725 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 416 450 IPR002885 -
Lja1g4160 725 Gene3D Tetratricopeptide repeat domain 23 172 IPR011990 GO:0005515
Lja1g4160 725 Gene3D Tetratricopeptide repeat domain 376 516 IPR011990 GO:0005515
Lja1g4160 725 Gene3D Tetratricopeptide repeat domain 517 708 IPR011990 GO:0005515
Lja1g4160 725 Pfam PPR repeat 390 415 IPR002885 -
Lja1g4160 725 Pfam PPR repeat 491 514 IPR002885 -
Lja1g4160 725 Pfam PPR repeat 593 616 IPR002885 -
Lja1g4160 725 Pfam PPR repeat 318 341 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4160 Lja-Chr1 53027653 53030320 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4160 29 694 Glycoside Hydrolase AT3G49170 29.840 4.56e-102 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4160 - - gmx:100787089 1130.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4160 1 53027653 53030320 Lja1g4160 1 53027653 53030320 ECH