Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4128 ATGGGTACCTCCAATGCAATTTCAGAGAACTCCAATGGCAACATCATCATCAGCAGCAACATCAACAGCAGCAGCAGCACTGAGACTGCAACGGAAAATCAGACCCCCCCAGCTGCTCCCTATGCCCAAGGAGAGAAGGTCTTAGCTAACCACACTAGTTGTCTTTATGAAGCCAAGGTTATGGAGATTGAGTACAGGAACAATCAATGGTGGTTCTTTGTTCATTATCTTGGTTGGAAGAAAAGTTGGGATGAATGGGTTGGTGTGGATCGTCTGCTGAAGCACACGGCGGAAAACATGAGCACGAAACAAGCCCTTGATGAGAAACATGGCAATGACAAGAATGCGAAAGTCCCCCGTGCATCCCAGGCGAAATCCAAGGGTTTTAACGTGGGAAGAGGCAGGAAAAGAAAGAATGAATCACTGGCTAAGGTAAAATCAGAGGTTGATCCTGATAAAGTTTTCAACATTCAGATCCCACCAACACTAAAGAAGCAATTAGTTGATGATTGTGAGTTTATTACCAATCTGGGCAAGCTTGTTAAGCTTCCTCGTACTCCTAGTGTGAGCGACATAGTTAAGAACTATTTTGATTACAAATTGAAGAAATGTGGCTCGATCCCTGATTCAACTGAAGAAATTATGAAAGGACTGTGTTTTTACTTTGACAATGCACTGCCAAATATGCTCTTGTACAAGAATGAGCGTGAGCAGTACAAAGAAGCATGTCCAAATGATATCTTACCTTCTACTATATATGGTGCTGAACATTTGCTGCGTCTCTTTGTTAAGTTGCCGGAGTTATTGCTCAAACTTAGCATTGAAAGTCAAACATTGAAAGAACTTCAGGCACAACTACTTGACTTTCTCAGGTTCTTGCAAAGAAATCAGAGCAAATTTTTCCTTTCTACTTATCATGTCCAAGAAGATACTGAGAACAGCACCAACAAACAAGGTGACGAGTAG 966 0.4193 MGTSNAISENSNGNIIISSNINSSSSTETATENQTPPAAPYAQGEKVLANHTSCLYEAKVMEIEYRNNQWWFFVHYLGWKKSWDEWVGVDRLLKHTAENMSTKQALDEKHGNDKNAKVPRASQAKSKGFNVGRGRKRKNESLAKVKSEVDPDKVFNIQIPPTLKKQLVDDCEFITNLGKLVKLPRTPSVSDIVKNYFDYKLKKCGSIPDSTEEIMKGLCFYFDNALPNMLLYKNEREQYKEACPNDILPSTIYGAEHLLRLFVKLPELLLKLSIESQTLKELQAQLLDFLRFLQRNQSKFFLSTYHVQEDTENSTNKQGDE* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4128 321 SUPERFAMILY Chromo domain-like 33 175 IPR016197 -
Lja1g4128 321 Pfam MRG 136 305 IPR026541 -
Lja1g4128 321 Gene3D - 23 122 - -
Lja1g4128 321 ProSiteProfiles MRG domain profile. 151 320 IPR026541 -
Lja1g4128 321 PANTHER CHROMATIN-BINDING PROTEIN 13 319 - -
Lja1g4128 321 MobiDBLite consensus disorder prediction 103 143 - -
Lja1g4128 321 PIRSF EAF3_MRG15 34 318 IPR008676 GO:0005634|GO:0006325|GO:0006355
Lja1g4128 321 PANTHER MORTALITY FACTOR 4-LIKE PROTEIN 13 319 IPR008676 GO:0005634|GO:0006325|GO:0006355
Lja1g4128 321 Gene3D MRG domain 151 319 IPR038217 -
Lja1g4128 321 Pfam RNA binding activity-knot of a chromodomain 43 92 IPR025995 -
Lja1g4128 321 MobiDBLite consensus disorder prediction 18 43 - -
Lja1g4128 321 MobiDBLite consensus disorder prediction 18 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4128 Lja-Chr1 52348232 52352417 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4128 K11339 - gmx:100777259 425.631
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4128 1 52348232 52352417 Lja1g4128 1 52348232 52352417 ECH