Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4118 ATGTCATCGTCCAGAGGTTTCGGTTTTTCAATCGCCGCCGATGATGCTTCACATTCTGATTCTTTCTACCTCTCTAGCTACTACCACCCAAAACCCCTCCTCCACAAGAATCAAACCCTAGAAGACGCCTTCACTCGTCTCTCCCTCTCCACCTCCGCCTTCAATCCTCCACCTCTCGATCACGCTTTCAGCCGCCACGCGTTTCACCCTCCCAATCTCACCCAAACCGGGTTCAACGCCGCTAATGCTGGTTCTGAATCGCTGTCGTCAGGGTTTCTGGATTCTGTTCCTCTGTTGAGGCAGAGCTCCGGTTTCTTCAACGGCGGCGCTGGTGATTTGTTGGGTGAAATCGGTGAAATTCCAAGGATGGATTTGAACGAGTGCTGGAGGGGGAGTGTTTTGTCTTTTGCTAAGGATCAATATGGATGTAGGATTTTGCAGGAGAGGATGAAGAGAATGGCGGCTGAGGATTTTTCCTTTATCTTCCTTGAGCTGATTGATCACGTGACTGAGCTCATGGTGGACCCTTTTGGGAACTATGTTTTTCAGAAGATGGTGGAGATTTGCAGTGATGAACAGAGGACTCGCATTGTTTTGGTGGTCACACAGCCTAATTTTCTCTTGGTCAGAGTTTGTCTCAAGCCACATGGAACGCGTTCTGTGGAGCGATTGTTGGAGAGTGTCACCAATGAAGAGCAAAGAGATCTCATTATGGCTGCTTTGAGCCCTGGTGCTGTTGTGTTAGCTAAGGATACAAATGGTCATCGTGTTGTTCTGTATTGTTTGAAACATTTCTCTGGAGAAGCTACTAAGTATCTTCTGAATGAGGTGGCAAACAACTCGTTTGGCATAGCCAAAGATAAGACTGGGTGCTGTGTGCTGCAGCAGTGCATTCTCCATGCTATTGGAGAAACCAAAATGAGGCTGATTGCTGATGTCATTGTAAATGCTTCCCTCCTAGCTGAGGACTGCTACGGCAACTATGTTGTGCAACATTTATTGTCTCTGAAAATACCAGTAGTTACAGAAAATCTACTCAGACAACTTCAAGGGAAGTTTACATATCTTGCCTGCAACAAGTATGGGAGTAATGTGGTGGAGAAGTTCTTTCAAGAATCAGGAGAAATGCACTCAATGCGTATTGTTTTAGAGTTGCTCCATGATCCCAATGTCGCGAGGCTTCTTGTGGATCCATATGGTAATTATGTCATCAAAACGGCCCTGATGATATCTAAGGGAGCCATTCGGAATGCTTTACTCCAGCTGATCCAACTAAACTCCACAATGATGCGAAACAACCTCTATGGCAAGAAGTTACTTGATAGTGTACAAAATTTTCTCTAA 1344 0.4561 MSSSRGFGFSIAADDASHSDSFYLSSYYHPKPLLHKNQTLEDAFTRLSLSTSAFNPPPLDHAFSRHAFHPPNLTQTGFNAANAGSESLSSGFLDSVPLLRQSSGFFNGGAGDLLGEIGEIPRMDLNECWRGSVLSFAKDQYGCRILQERMKRMAAEDFSFIFLELIDHVTELMVDPFGNYVFQKMVEICSDEQRTRIVLVVTQPNFLLVRVCLKPHGTRSVERLLESVTNEEQRDLIMAALSPGAVVLAKDTNGHRVVLYCLKHFSGEATKYLLNEVANNSFGIAKDKTGCCVLQQCILHAIGETKMRLIADVIVNASLLAEDCYGNYVVQHLLSLKIPVVTENLLRQLQGKFTYLACNKYGSNVVEKFFQESGEMHSMRIVLELLHDPNVARLLVDPYGNYVIKTALMISKGAIRNALLQLIQLNSTMMRNNLYGKKLLDSVQNFL* 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4118 447 ProSiteProfiles Pumilio RNA-binding repeat profile. 164 199 IPR001313 GO:0003723
Lja1g4118 447 SMART pum_5 164 199 IPR001313 GO:0003723
Lja1g4118 447 SMART pum_5 240 275 IPR001313 GO:0003723
Lja1g4118 447 SMART pum_5 348 383 IPR001313 GO:0003723
Lja1g4118 447 SMART pum_5 276 311 IPR001313 GO:0003723
Lja1g4118 447 SMART pum_5 312 347 IPR001313 GO:0003723
Lja1g4118 447 SMART pum_5 203 239 IPR001313 GO:0003723
Lja1g4118 447 SMART pum_5 386 421 IPR001313 GO:0003723
Lja1g4118 447 SMART pum_5 128 163 IPR001313 GO:0003723
Lja1g4118 447 ProSiteProfiles Pumilio RNA-binding repeat profile. 348 383 IPR001313 GO:0003723
Lja1g4118 447 CDD Pumilio 131 443 IPR033712 GO:0003723
Lja1g4118 447 PANTHER PUMILIO HOMOLOG 15 127 440 - -
Lja1g4118 447 ProSiteProfiles Pumilio RNA-binding repeat profile. 124 163 IPR001313 GO:0003723
Lja1g4118 447 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 105 447 IPR033133 GO:0003723
Lja1g4118 447 SUPERFAMILY ARM repeat 127 443 IPR016024 -
Lja1g4118 447 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 127 440 - -
Lja1g4118 447 ProSiteProfiles Pumilio RNA-binding repeat profile. 312 347 IPR001313 GO:0003723
Lja1g4118 447 Pfam Pumilio-family RNA binding repeat 284 313 IPR001313 GO:0003723
Lja1g4118 447 Pfam Pumilio-family RNA binding repeat 246 277 IPR001313 GO:0003723
Lja1g4118 447 Pfam Pumilio-family RNA binding repeat 168 200 IPR001313 GO:0003723
Lja1g4118 447 Pfam Pumilio-family RNA binding repeat 390 408 IPR001313 GO:0003723
Lja1g4118 447 Pfam Pumilio-family RNA binding repeat 320 334 IPR001313 GO:0003723
Lja1g4118 447 Pfam Pumilio-family RNA binding repeat 209 241 IPR001313 GO:0003723
Lja1g4118 447 Pfam Pumilio-family RNA binding repeat 355 386 IPR001313 GO:0003723
Lja1g4118 447 Pfam Pumilio-family RNA binding repeat 133 166 IPR001313 GO:0003723
Lja1g4118 447 ProSiteProfiles Pumilio RNA-binding repeat profile. 384 421 IPR001313 GO:0003723
Lja1g4118 447 Gene3D - 119 447 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4118 Lja-Chr1 52235538 52239570 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4118 - - lja:Lj0g3v0249229.1 873.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4118 1 52235538 52239570 Lja1g4118 1 52235538 52239570 ECH