Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4115 ATGAACTTCAAAATGAAGAAAAAAATAGCCACCACCATTCCCAAAACTCATTACAACACCAACAACGATGAAGAACACTCTGATGATCAAACTTGCAGAAGCCCTTGTCGCTGTTTCTTCTGCACCATGAGAGAACCAGATAGAACACTCAGAAGATCTAGAATATCTACCTGCTTCAGAGAAATGCCTCAGAGAGAGAATCAAGAACATGTTTTGGTGCTAAGTGCACTCTGGCATCTCGCTATGACTCACCCAAATGATCCAGAGTTCCCTTCCCTTGGCATATTCAAGTGCATGGCGAATCTAATCCACAAAGGAATCCACAACAAAAACTGGCTCCTCAAAGACCAAAACATCTACATACCCTATTATGCTGCTCACATCATTGGCTCTTACACCATGAACAAAGAGGAGTTTGCACAAATAGCTGTTGAATCAGGTGTTATCCCACCATTGTTGGAGCTTCTGAGTGGTAAAGTCAGTTGGGTTGAGCAGAGAGTTGCTGTTAGAGCACTTGGTCACTTGGCTAGCTACAATAGTACATTCAAATCAGTGGTGGAGTATGAACAAAAAGTGGTGAAGTTGACCTTGAACTTGGCTTCTACATGCTTAGAAGCTGTTTATGTTGAGTTTTTTGAGGTGAAAGATGAGAACAGAGCAAGAACAGAGTACCATAGAAACTTGCTGACAAGAGGGATTGGTGATTTGGAGATGGAGAATCGAAAAGTGGAGGAATGGGCAAGCCAACTTCAAAGCTGGTCTATTTACCTTCTCAATTGCTTTGCTTCCAAACAAAGCTCTCTATCTCTGAATCTCATCTGCAAAATTGTGTTCTTGGAGGAACTATGTGACATGTGGGGTGGATTGGTGAATCACACATCACCAGGTGGGGTTGGACTCATTAGAATTCTGTGCTATAACAAAATTGGAAGGAAAAGTATTTCTGAGTTGCCAAAAGTTTTGGAAACTCTAGGTAATCTCTCAAGATCTTCAGATGATTGGCAATATATTGGTATAGATTGTCTTGTTCGGCTTCTCAAGGACAGAGATACAAGGTACAGAGTTATTGATATTGCCATTTCATACCTCATTGATTTGATTGAACTTAGAAGCATTGGAGATAAATCTAATGTAGGTGACACCATAACAAAAGTGCTCCTTCTAGAACATGGTTTTGGTAAATTGATCAAGCACAAAAGTCTAAAAGTTGAGAAAGCTTTACAAGAAGTATTGGACTTGAAGGTGGAGAGGAGGAACAAGGAGAAACTGATGTCAGAGGAAAAGTTAGAGGAAGCAAGGGTTTTGGTGAGTTTGATGAAGCAACAAGGGAATCATATGTTCAGGTTGGGGAAGGTAGAAGAAGCTTTGCTGAGATATACTGAAGCACTTGATGTTTGCCCTTTGAGGTTTAGAAAAGAAAGGATGAAGCTTTATAGCAACAAAGCTCAGTGTTATTTGCTGCTGAAAGATGCAGATTCAGCTATCAGTGATTCGACGCGTGCTCTTTGTTTGTCCAATCCTGCAAACTCGCATGATAAAAGCCTTTGGAGGAGGTCGCAGGCGTATGACATGAAAGGAATGGCGAAAGAGAGCCTCATGGACTGCGTTGTGTTCTTGAGCAGTTGGATGACCAAGAACACAACGCAGTCCAAGCATAGAGTCAAGATTCCATACCACGCTGCACGCATGATCTGCAAGCAGATGGATGCCACTTGGCTCTTTGCCAATACTCGCTCGAAGGCGAAACAAAATATCAATCTAGTGGTAGAAAAGAGAGAAGGAACTAATGAAATTGAAGGGGATGAGAATGAGGGCGAGTATGAAAAGCAAATCCTTGATCATAAGATGATGATGATGATGGAAAAGAGAAGTCTCATGCCCGGTCTATCTACCATTATTGAAGAACCTTTTCATGGAAAAAATGCTAGTAGGAGAAAGATGGAAATAAGGGGAGGGAGACCAAAGTAA 1968 0.4141 MNFKMKKKIATTIPKTHYNTNNDEEHSDDQTCRSPCRCFFCTMREPDRTLRRSRISTCFREMPQRENQEHVLVLSALWHLAMTHPNDPEFPSLGIFKCMANLIHKGIHNKNWLLKDQNIYIPYYAAHIIGSYTMNKEEFAQIAVESGVIPPLLELLSGKVSWVEQRVAVRALGHLASYNSTFKSVVEYEQKVVKLTLNLASTCLEAVYVEFFEVKDENRARTEYHRNLLTRGIGDLEMENRKVEEWASQLQSWSIYLLNCFASKQSSLSLNLICKIVFLEELCDMWGGLVNHTSPGGVGLIRILCYNKIGRKSISELPKVLETLGNLSRSSDDWQYIGIDCLVRLLKDRDTRYRVIDIAISYLIDLIELRSIGDKSNVGDTITKVLLLEHGFGKLIKHKSLKVEKALQEVLDLKVERRNKEKLMSEEKLEEARVLVSLMKQQGNHMFRLGKVEEALLRYTEALDVCPLRFRKERMKLYSNKAQCYLLLKDADSAISDSTRALCLSNPANSHDKSLWRRSQAYDMKGMAKESLMDCVVFLSSWMTKNTTQSKHRVKIPYHAARMICKQMDATWLFANTRSKAKQNINLVVEKREGTNEIEGDENEGEYEKQILDHKMMMMMEKRSLMPGLSTIIEEPFHGKNASRRKMEIRGGRPK* 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4115 655 SUPERFAMILY TPR-like 436 535 IPR011990 GO:0005515
Lja1g4115 655 Gene3D - 74 403 IPR011989 -
Lja1g4115 655 PANTHER ARM-REPEAT/TETRATRICOPEPTIDE REPEAT (TPR)-LIKE PROTEIN 19 647 - -
Lja1g4115 655 SMART arm_5 136 177 IPR000225 GO:0005515
Lja1g4115 655 Coils Coil 403 423 - -
Lja1g4115 655 Gene3D Tetratricopeptide repeat domain 435 560 IPR011990 GO:0005515
Lja1g4115 655 SUPERFAMILY ARM repeat 77 357 IPR016024 -
Lja1g4115 655 PANTHER ARM-REPEAT/TETRATRICOPEPTIDE REPEAT (TPR)-LIKE PROTEIN 19 647 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4115 Lja-Chr1 52221268 52223850 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4115 - - gmx:100777591 858.596
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4115 1 52221268 52223850 Lja1g4115 1 52221268 52223850 ECH