Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4108 ATGAAGGAACAAGGGGAACAACTATGCCAGGCGGCGAGGAACGGCGACACGGAGAAGCTGAAGTCTCTCATCGACTCCGGCGCCGACGTCACCTTTTTCGACGATAACGGCCTTACTCCTCTGATGCACGCCGCAAAGCACGGCCATGCACCCATCCTCACCATCCTTCTCTCCGCCGGCGCACCCTGGAACGCCCTTTCCCCCTCCAACCTCTCCGCCGGCGACTTCGCCATGGATGAAGGTCACCAAGAAGCCTTCGACCTCCTCCTCAATGCAGGGATTCAAGCTGAGCTTGTGCTAGGTACAATTGCAAGGAGAGATAATGAAAATGCGAATTCCGGTGGTAATCGCGATTATTTGGAAGATAGGGTGAGTTTTAGTGAGGATAAGGTTATGGACTCTGAGAGTAAAGCTGTCATGATGGCGTGGGAGAAGCCGTTGATGGAGGCTCACGCGAAGGCGGTTTGTTCGGGAGGCGGTCATGTTCTCAATGTTGGATTTGGAATGGGACTTGTGGATACTGCCATTCAGCAATATGCTCCTGTGTCACACACCATTGTTGAGGCTCATCCGGAGGTTTATGAACGCATGCTTCGCGATGGCTGGGGTCAGAAGGAAAATGTAAAGATCGTTTTTGGCCGCTGGCAAGATGTTCTGCCTCAGCTCGAGACGTATGATGGAATATTCTTTGACACCTATGGGGAGTACTATGAAGACCTGAGAGAGTTCCACCAACATCTCCCAGCACTGTTGAAACCGGGTGGAATCTACTCATTCTTCAATGGCCTTTGTGGTGGTAATGCGTTTTTCCATGTTGTTTACTGCCATTTGGTATCTCTTGAGCTTGAGAATTTGGGCTATTCCACACAATTAATTCCATTGCCTGTCAAGGATTGTTTGGGAGAACAAGTTTGGGAAGGTGTTAAACACAAATATTGGCAGCTTGATACGTATTACCTCCCTGTCTGTCAGTCTGTAGAGGACTGA 987 0.4995 MKEQGEQLCQAARNGDTEKLKSLIDSGADVTFFDDNGLTPLMHAAKHGHAPILTILLSAGAPWNALSPSNLSAGDFAMDEGHQEAFDLLLNAGIQAELVLGTIARRDNENANSGGNRDYLEDRVSFSEDKVMDSESKAVMMAWEKPLMEAHAKAVCSGGGHVLNVGFGMGLVDTAIQQYAPVSHTIVEAHPEVYERMLRDGWGQKENVKIVFGRWQDVLPQLETYDGIFFDTYGEYYEDLREFHQHLPALLKPGGIYSFFNGLCGGNAFFHVVYCHLVSLELENLGYSTQLIPLPVKDCLGEQVWEGVKHKYWQLDTYYLPVCQSVED* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4108 328 SMART ANK_2a 69 98 IPR002110 GO:0005515
Lja1g4108 328 SMART ANK_2a 3 32 IPR002110 GO:0005515
Lja1g4108 328 SMART ANK_2a 36 65 IPR002110 GO:0005515
Lja1g4108 328 CDD AdoMet_MTases 162 257 - -
Lja1g4108 328 ProSiteProfiles Arginine and arginine-like N-methyltransferase domain profile. 110 328 IPR026480 -
Lja1g4108 328 ProSiteProfiles Ankyrin repeat region circular profile. 36 61 - -
Lja1g4108 328 PIRSF Rmt2 104 327 IPR017408 GO:0016274
Lja1g4108 328 PIRSF Rmt2 1 114 IPR017408 GO:0016274
Lja1g4108 328 SUPERFAMILY Ankyrin repeat 8 96 IPR036770 -
Lja1g4108 328 ProSiteProfiles Ankyrin repeat profile. 36 68 IPR002110 GO:0005515
Lja1g4108 328 Gene3D - 1 110 IPR036770 -
Lja1g4108 328 Gene3D Vaccinia Virus protein VP39 111 325 IPR029063 -
Lja1g4108 328 PANTHER GUANIDINOACETATE N-METHYLTRANSFERASE 2 325 - -
Lja1g4108 328 Pfam Ankyrin repeats (3 copies) 8 95 IPR002110 GO:0005515
Lja1g4108 328 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 123 323 IPR029063 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4108 K18477 - gmx:100527621 603.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4108 1 52110674 52112907 Lja1g4108 1 52110674 52112907 ECH