Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4107 ATGGACCCATCTATAGTGAAGCTTCTTGAAGATGATGAGGATGAAACCATGCATTCAGGAGCAGATGTCGAAGCGTTTCAAGCTGCATTAAATAGAGACATAGGAGGAGACGCTTCTTCTTCACAGCTGTCTGATTCGGATGCAGGAAGCAATAACTCATTCAGTCAGTCATTACCAAAGCTGCCAACTTCTAGCCATGACAACCAGACTGACTGTCAAAATCAAGATCCTAAAATTGCAAAGCAGCAAGAGCAACCTTCATCTGAAATGGAGATGAAGCAACAAGGACCTCTCATGGAACAACAACAGAATGTAAATAATCCTCTTTTATCTCGTAATCAATCTCAAGATGAATGTCCCCAAGGCCAGACTGGACCAGTTTCCCATCAAAATTCTCAAATTCAGAACTCTGAAAAAGATACTGTCCGTAAGCATGAGGCAGTCAAAACTGATAATCCCAACAGTGAATCTCAGTATGCAAAGTTGCAGCAGATGAGTAATCAACAGGCCTCAGTCAATGAACAGTCTAGTACCCAAACCAATCGTGGTAAACAGGTGCCATTTGGCCTATTACTCCCTATCTTGATTCCCCAACTTCCCAAAGACAGAGCCTTGCAACTTCATACTTTGTTTAATAAATTGAAGAAAGATGAAATACCCAAAGATAATTTTGTACGGCTCATGAAAGGTATTGTTGGGGAGCAGATGCTGAGATTAGCATTAGCAAAAGTACAATTACAGCTTAAATCCAACCCAGGACCTCCTGGGCAGCAGCACCCAGTAAGGATGCCAACTATTAGTTCAGGTGCAGCAAAATTTAATGATCCCCATGCATTAGCTCAGCAGCCTCAGCTGCATCAGAGAAGTATAAATGCTGCTGCAGACCAATCTCATAATAATTCCTCTGCTGTCCAATTGAAAAATGAATCAGCCTATCCAACTATGGATATTAATGCTAAGAAATCTCCAGAGCTGGATGTTCAAGTAGCACCTCAAGGTCTGAAACAAGGTCAGTTACCATTGCCCAGTTCTAATGCTGTTGGTCAAGAAACTGAAAGATCCTCACTTCACATACATGGCCTTAGTAAGCAGCAACAACAGCATCTACATTTCCCATCCGCATATGGAAGCAGTGGTGGTAATTATAACCCTTTTTCAGGGACAACCAGTAGTTCCTCATCATCTCTCAGACCACAACCTCATGATTCACACATGAGGCAAATTCCACCTCAGAGCATTGGTCTAAATCACGTAGGTGGGGCAACACAAGGTTCGTTTGGTACAGTAAAACTTGAGCGGCAGAACTCTTACAGTGATCCTAAGAGAATGCCAGGTGGATCTGTGTCTCCTGCGGTAAACAATACAGCATCACAACAAAATTTGAATCCTTGGCAACAATCAAACGAACAAAATTCTGGCATGTTGTCATCTGCTTCATATGTCAAAAGGGAACCTAATGACCTCTCTACTGAGCAGCAATATAGGCACCATTTGTCTAAATTGCACGGGTTTCCTTCTGTAAATTCTGCTAAAACTGACCAGGGTAGTGGTGCCAATCAAGGCACTGTAAATGATGACTTTTCAAGAGGTCCTCCGGCATCCACAAGCATGCCACATACAACACCTGCTAGCTTGATGCCACTCAATTCTGCTTCCTCTTCTGTAGCTCAGCCAGGTCCGACTGTCTCTTTAAGCTCTCAGATCCCTTCAAACACTTCTGGTAAGAAACCTTCTCATGGTCAGAAAAAACCAGTCGAAGCAGTTGGTTCTTCACCTCCTCCTCCAAGCAAGAAGCAAAAAGTGTCTGGGGGATCTTTGGACCAAAGCATTGAACAGCTTAATGATGTTACAGCTGTTGGTGGGGTTGATCTGAGGGAGGAGGAAGAACAGTTATTTTCTGGGCCCAGGGAGGATAGTCGAGTTTCAGAAGCATCTCGAAGAGTTGTGCAAGAAGAAGAGGAAAGTCTGATTTTGCAAAAAGCTCCGTTGCAGAAAAAATTGACTAAGATTATGGCTGAGTGTGGCTTGAAGGGAATGAGTAATGATGTGGAGAAATGCTTGTCACTGTGTGTGGAGGAAAGAATGCGTGGATTAATAAGTAACATGATTAGAATGTCAAAACAGCGGGTTGACCTTGAAAAGATGAGACACCGGACTGTTGTCACTTCTGATGTTCGCCAGCAAATCATGGCAATGAATACAAAAGCAAGGGAAGAGTGGGAGAAAAAACAGGCAGAAACAGAGAAGCTCCGGAAAGTAACTGATGTTGAAGGTCATTCCGGAGTTGATGGTGACAGGGAGAAGGATGAGGGTCGCAACAAAGCAATAAAGGTGAACAAGGAGGTGGATGACAAGATGAGGACAAATGCGGCAAATGTTGCTGCCCGAGCTGCTGTTGGGGGAGATGATGTGCTGTCGAAGTGGCAACATATGGCTGAGCTAGCTAAGCAGAAACGTGAAGGCGGTATGGATTCTTCATCTGGTTCTCAGCCAGCTAAAGACTTGAGTCGCAAGTCTTCACCATCATCATCAGGAAGGAGTACAAAAGATAATCAAGAAAGGGGGAAAAAAGGCCCAACTTCAACTCAGACTTCAGGGGCTGCTAGAAAATTTGGGAGACATAATGCCTTAGCTCATCCTAGGATAGCTCGAAGCATCTCTGTGAAGGATGCGATTGCAGTCCTGGAGAGGGAACCTCAGATGTCGAAATCATCACTCTTATATCGATTGTATGAGAAAATCCATTCTGATGCTTCAACTGAATGA 2766 0.4371 MDPSIVKLLEDDEDETMHSGADVEAFQAALNRDIGGDASSSQLSDSDAGSNNSFSQSLPKLPTSSHDNQTDCQNQDPKIAKQQEQPSSEMEMKQQGPLMEQQQNVNNPLLSRNQSQDECPQGQTGPVSHQNSQIQNSEKDTVRKHEAVKTDNPNSESQYAKLQQMSNQQASVNEQSSTQTNRGKQVPFGLLLPILIPQLPKDRALQLHTLFNKLKKDEIPKDNFVRLMKGIVGEQMLRLALAKVQLQLKSNPGPPGQQHPVRMPTISSGAAKFNDPHALAQQPQLHQRSINAAADQSHNNSSAVQLKNESAYPTMDINAKKSPELDVQVAPQGLKQGQLPLPSSNAVGQETERSSLHIHGLSKQQQQHLHFPSAYGSSGGNYNPFSGTTSSSSSSLRPQPHDSHMRQIPPQSIGLNHVGGATQGSFGTVKLERQNSYSDPKRMPGGSVSPAVNNTASQQNLNPWQQSNEQNSGMLSSASYVKREPNDLSTEQQYRHHLSKLHGFPSVNSAKTDQGSGANQGTVNDDFSRGPPASTSMPHTTPASLMPLNSASSSVAQPGPTVSLSSQIPSNTSGKKPSHGQKKPVEAVGSSPPPPSKKQKVSGGSLDQSIEQLNDVTAVGGVDLREEEEQLFSGPREDSRVSEASRRVVQEEEESLILQKAPLQKKLTKIMAECGLKGMSNDVEKCLSLCVEERMRGLISNMIRMSKQRVDLEKMRHRTVVTSDVRQQIMAMNTKAREEWEKKQAETEKLRKVTDVEGHSGVDGDREKDEGRNKAIKVNKEVDDKMRTNAANVAARAAVGGDDVLSKWQHMAELAKQKREGGMDSSSGSQPAKDLSRKSSPSSSGRSTKDNQERGKKGPTSTQTSGAARKFGRHNALAHPRIARSISVKDAIAVLEREPQMSKSSLLYRLYEKIHSDASTE* 922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4107 921 MobiDBLite consensus disorder prediction 165 184 - -
Lja1g4107 921 ProSiteProfiles RST domain profile. 179 250 IPR022003 -
Lja1g4107 921 MobiDBLite consensus disorder prediction 281 311 - -
Lja1g4107 921 Pfam RCD1-SRO-TAF4 (RST) plant domain 184 245 IPR022003 -
Lja1g4107 921 PANTHER IP01149P-RELATED 39 915 - -
Lja1g4107 921 MobiDBLite consensus disorder prediction 501 608 - -
Lja1g4107 921 CDD TAF4 608 909 IPR007900 GO:0005669|GO:0006352
Lja1g4107 921 MobiDBLite consensus disorder prediction 815 878 - -
Lja1g4107 921 MobiDBLite consensus disorder prediction 334 455 - -
Lja1g4107 921 MobiDBLite consensus disorder prediction 505 578 - -
Lja1g4107 921 MobiDBLite consensus disorder prediction 822 848 - -
Lja1g4107 921 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 4 39 915 IPR045144 GO:0005669|GO:0006352
Lja1g4107 921 MobiDBLite consensus disorder prediction 337 352 - -
Lja1g4107 921 MobiDBLite consensus disorder prediction 252 271 - -
Lja1g4107 921 MobiDBLite consensus disorder prediction 358 434 - -
Lja1g4107 921 MobiDBLite consensus disorder prediction 34 137 - -
Lja1g4107 921 Gene3D Histone, subunit A 658 703 IPR009072 GO:0046982
Lja1g4107 921 Pfam Transcription initiation factor TFIID component TAF4 family 613 910 IPR007900 GO:0005669|GO:0006352
Lja1g4107 921 MobiDBLite consensus disorder prediction 1 157 - -
Lja1g4107 921 MobiDBLite consensus disorder prediction 739 783 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4107 Lja-Chr1 52098998 52107723 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4107 K03129 - gmx:100797127 1285.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4107 1 52098998 52107723 Lja1g4107 1 52098998 52107723 ECH