Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4104 ATGTCGAATCGATTCAGTCAAGGAAGGCAAGACACTAGTACCAACAACAACAACAACAAGGGTTTCAACAAATCACACAAGAAATTTCTCCCCAAAAACCCCAACCCGAAACCAACCCTTTCAGCTTCCCTCAGAGAATCTGGTTCCGGTAGCAGTAGCGGTAATCCGTCAGGTAGCGACGTTGGCAATGGCAATTTCGTCAAATACTTGCCGCAAGACGAGGCTGTGGCAGCTGGTCTTGGCGCTGAGGATGGCGGTTTGGATCCCATCGAATCTCAGAGAGTCGTTGATCTTCTCAATTCTGAGTTGTCTCGGTTGCTCAAGTTGAAACCTAAAGAATTCTGGAAACAAGTGGCTGCTGACACCTCCTTGCATGCGTTTCTGGATAGCTTCTTGCAATTTAGGAGCAGGTGGTATGATTTCCCTCACCGTGGGGTTAAAGGGATTCTTGCAGGTGTTATTGTTGGAGAGATTGATTTGAGTCGCCGCGTGTTCATGGTATTGTATCGAATTTCTTCCAATAAAGATCCTGGTGGTCGGCCTGCTGATACACTCAGTTCTAGAGACCATGGAGTTCTTTTGCAGGAGAAGAAGTTGCTTGAACTGCCGAAGTTGTTAGATATATGTGCCATATACTATCATGAAAATGAAGAATTGACAAGATTGCTGGTTAGAAATGCTTTGAGTGCTCAGCCTTGGATCCATAATAGTTTGCCTTCAGTAATATCCCATTTTATGGGTATTGTCAGCACAATGCACGAACGTTGCAGTTCTTCATTGGAGGTCTTATTTTCTTCTGGAAGTCCTGATAACCAGAATGCAACTTTTCTTCAAGCTGATCTACTGGAGGTGATGGACTTTATAAATGATGCAATCGTATCATTGGATGCTTTTGTTAATACATTCGAACCAGCAGCTGTATTCTTCTCTTGTCCAGTGGAAATGAGCTATGGGAATGAGGAACTGCTAAGTCTCCTTGCCCGATTGCATGATTCGCTAATTCCATCCTTGCAAAAGGGATTCCAAATCATTTTTGCTGACAAACAAGATGACAGAGTGTCTAATACCTTGGTTAGTTTGAAGATGTTGAGAATAAGATTGGTGAACTTTGGGTGGCAACTTTTGCACTTCTGCTATCTAAGTGATGAAGTGTTCAGAGATAGCATCCCCCTTGCTGCGGTCACGAAGATGTTTCCTGCCAATGTAGAGGACCCAGTCATCAGAGCTGATATTCTGGTTCAAACACTTAGAGAGATCAATTCAGTATCATTATGTTTTCAGGAAATCCTCCCGAAGAAAACATTTCTTCAAGATGTTGAAAGGAACTTCAATTTATTAAGCAGGATTGAGAGATTAAAGGATAATGGATGGATATTCATGGATGATGAACAGTTTCAATATATATCTGGGATTTTGAGTTCTCCAAAAGAGATTTCTAAGGAGTCAAGTTCTACAATGACCACTGTGCCGAACCAAGCATTGCGGATGGATGAAGATGCGGCTATTATAGAGTCAAAGATCAGTCAAATTAGGGACCTGTTCCCTGATTATGGTAAAGGGTTCTTAGCTGCCTGTCTCGAGGTTTATGACCAGAATCCAGAAGAGGTTATTCAAAGAATTTTAGAGGATACCCTTCATGAAGATCTGCGGTGCTTGGATACTTCTCTAGAGACAGTTCCACAGTCATTAGCCAAGACCACCACTGTGAGCAGAATTGATAAAGGAAAAGGTAAATTAATTGATTCTACGTCAGTGTCCTCAAATACAGTTGTTGTTAGTGGGAAGCAACAGACAGAAGCGCCATTGATGCCATCCTCTGCTCCGCTAGGGAAATTTATTAGGAAATCTAGAGCTGATGCGCCTCCTGATCTCAGTATTTTGGATAAAAAGGATGAGAAAGATGTATTGAAAACCGCTATGCTTTCACAATATGAATATGATGATGAGTATGATGACTCTTTTGATGACTTGGGTCTAAGCGTGGGGGACTCTGGATTAGAAGAAAATGAAATACTCGGTGACAAAATGAATGCAATGCCCCAATCTTGGGCAAAAGAAACTGGAAACTCCGGCCAAAATGCCCCTAATGCAAAATGGGGCTCCAAGAAAAAGCCACAGTTCTATGTCAAGGATGGTAAAAATTACAGCTACAAAGTGGCAGGTGCAACAGCAGTTGCAAATTCTGATGAGGCTTCATTACTTAATCAAGCTCAGAAAGAATTAATACATGGTCTTGGACGTGGCGGCAACCATCCTTTTGGTGCGGTGAGGAAGTTCACAGAATTCAAGGATAATGATAACCAGTCCCATGTTTCTGAAACAGAAGGCAGAGGGGTTTTGGGCAATCCTAGAAATAGGGGAAGGAATGAAGGGGGAAAACAAACTGAACCTCATCAACCACAGGAGACACAGTCTAATGGTTCTGAGATGGAAGGACAAGATCATGTTTCAAATAACAGGGGCAGAGGGAGAGGCAGAGGGAGGGGAGGTGGAAGAAGCAACCATTACAGGAAAGACCAAGCCATGAAGAAGCATTTCTCTGGATTGGGTGGTTTTTAA 2559 0.4263 MSNRFSQGRQDTSTNNNNNKGFNKSHKKFLPKNPNPKPTLSASLRESGSGSSSGNPSGSDVGNGNFVKYLPQDEAVAAGLGAEDGGLDPIESQRVVDLLNSELSRLLKLKPKEFWKQVAADTSLHAFLDSFLQFRSRWYDFPHRGVKGILAGVIVGEIDLSRRVFMVLYRISSNKDPGGRPADTLSSRDHGVLLQEKKLLELPKLLDICAIYYHENEELTRLLVRNALSAQPWIHNSLPSVISHFMGIVSTMHERCSSSLEVLFSSGSPDNQNATFLQADLLEVMDFINDAIVSLDAFVNTFEPAAVFFSCPVEMSYGNEELLSLLARLHDSLIPSLQKGFQIIFADKQDDRVSNTLVSLKMLRIRLVNFGWQLLHFCYLSDEVFRDSIPLAAVTKMFPANVEDPVIRADILVQTLREINSVSLCFQEILPKKTFLQDVERNFNLLSRIERLKDNGWIFMDDEQFQYISGILSSPKEISKESSSTMTTVPNQALRMDEDAAIIESKISQIRDLFPDYGKGFLAACLEVYDQNPEEVIQRILEDTLHEDLRCLDTSLETVPQSLAKTTTVSRIDKGKGKLIDSTSVSSNTVVVSGKQQTEAPLMPSSAPLGKFIRKSRADAPPDLSILDKKDEKDVLKTAMLSQYEYDDEYDDSFDDLGLSVGDSGLEENEILGDKMNAMPQSWAKETGNSGQNAPNAKWGSKKKPQFYVKDGKNYSYKVAGATAVANSDEASLLNQAQKELIHGLGRGGNHPFGAVRKFTEFKDNDNQSHVSETEGRGVLGNPRNRGRNEGGKQTEPHQPQETQSNGSEMEGQDHVSNNRGRGRGRGRGGGRSNHYRKDQAMKKHFSGLGGF* 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4104 852 MobiDBLite consensus disorder prediction 36 62 - -
Lja1g4104 852 Pfam CUE domain 504 543 IPR003892 GO:0043130
Lja1g4104 852 Gene3D - 502 545 - -
Lja1g4104 852 PANTHER ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 2 ASC-1 COMPLEX SUBUNIT P100 16 850 - -
Lja1g4104 852 CDD CUE_ASCC2 504 543 IPR041800 -
Lja1g4104 852 MobiDBLite consensus disorder prediction 682 704 - -
Lja1g4104 852 MobiDBLite consensus disorder prediction 682 699 - -
Lja1g4104 852 MobiDBLite consensus disorder prediction 761 852 - -
Lja1g4104 852 ProSiteProfiles CUE domain profile. 502 545 IPR003892 GO:0043130
Lja1g4104 852 MobiDBLite consensus disorder prediction 1 24 - -
Lja1g4104 852 PANTHER ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 2 16 850 - -
Lja1g4104 852 SMART cue_7 502 544 IPR003892 GO:0043130
Lja1g4104 852 MobiDBLite consensus disorder prediction 1 64 - -
Lja1g4104 852 SUPERFAMILY UBA-like 502 559 IPR009060 GO:0005515
Lja1g4104 852 MobiDBLite consensus disorder prediction 796 814 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4104 K18667 - gmx:100778129 1180.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4104 1 52065520 52072463 Lja1g4104 1 52065520 52072463 ECH