Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4084 ATGTCTTCGTGGCTTGCCCGTTCCCTGAAAAACTCTCTCCGCCTCGACGACGACGGAGACGACCAAATCGCCGCCGCACCGGATTCACCAACCGGGACCCACCCGCAACACCAACAACAGATTCAACCACCGCAAGAGAATGATAATAATAATGCAGTTAGATCAGAAGAAGATGAAGAAGAAGAAGAAGAAGACGATGAAACGCATGGGCGTGGTGGTGTTAAAGAGGACCTCGACGAGATCAAGCAAACCCTAACCCGTCAATTCTGGGGAATGGCCTCCTTCCTCGCCCCGCCGCCACCACCACCTTCCCAATCCGATCGCGCCGCACCTTTCTTTTCCGATCACTCTCTTTCCGGCGGTGCAAACGAAGAACAACAATTGGATCATGGAGGTAATCGTAATCCTGATGATGATGATGATGATGATGATGAGGAGGAGGAGGAGGAGGAGGAGGATGCGAATTCTGATCAATCTTCGGTGGTGGAACGAGGAGACGATGACCTCCGCACGGATGATCCTGACCGGAATTCGATTCCGTCCGGATCCGATTCGGAAGGGAACCAGGAACCGGAAATTGACATCGAAAACGCGGTTGGAATCACGGAGGAGGTGTTGACTTTCGCTATGAATATCGCTATGCATCCTGAGACGTGGTTGGATTTTCCAATTGATGAGGAAGAAGACACCGACGATTTCGACATGTCCGAAGCCCAACAAGAGCATGCTGCGGTTATTGAAAGGCTTGCTCCGAGATTAGCTGCGCTCAGGATTGAACTGTGTCCTTGCCATATGAGTGAGGGTTACTTCTGGAAAGTCTATTTCGTGCTCTTGCATTCAAGGCTTAATAAACAAGATACTGACATTTTGTCTACACCCCAGGTCAGGGAAGCCAGAGCAATGTGGATGAAGGAATTGCATAAACAAATGAAGCCAGAATTTGAAATTTTTGGAAGAAATTCTTTCTACTTGAAGGACAGTGTTCAACCTGATGATTTTTCTCCTAGATTAGTAGATGACACCTGTTCTGATGACACGCCTCATCGGACTTATGGATCTGAAACAACAACTTCTTCGTCCATGATGGCAGATAACGAGATTGAGAAATATCCGGTTGAAAGTTCTGGAACACATTTCATCGATAAATCAGTTACTGAGGAAAATATTGTTAAAACTGAAAACAAGGATCTAAGAAGTGGTGGGCCATCTCATATGATTATTCAGGACTATGGTGGTGATGATGACAACGAATGGCCAGAGGAAGATTCTGATTTAGGAGGATATGTTGGAACCAGTCTCCCCTTGTTGAATGAAGAAGACATATCTTTCAGTGATCTCGAGGATGATGATTATGATATTAAACATGTTAGTTCCAATACAGGTTCAAAGCTGGTATGA 1398 0.4607 MSSWLARSLKNSLRLDDDGDDQIAAAPDSPTGTHPQHQQQIQPPQENDNNNAVRSEEDEEEEEEDDETHGRGGVKEDLDEIKQTLTRQFWGMASFLAPPPPPPSQSDRAAPFFSDHSLSGGANEEQQLDHGGNRNPDDDDDDDDEEEEEEEEDANSDQSSVVERGDDDLRTDDPDRNSIPSGSDSEGNQEPEIDIENAVGITEEVLTFAMNIAMHPETWLDFPIDEEEDTDDFDMSEAQQEHAAVIERLAPRLAALRIELCPCHMSEGYFWKVYFVLLHSRLNKQDTDILSTPQVREARAMWMKELHKQMKPEFEIFGRNSFYLKDSVQPDDFSPRLVDDTCSDDTPHRTYGSETTTSSSMMADNEIEKYPVESSGTHFIDKSVTEENIVKTENKDLRSGGPSHMIIQDYGGDDDNEWPEEDSDLGGYVGTSLPLLNEEDISFSDLEDDDYDIKHVSSNTGSKLV* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4084 465 MobiDBLite consensus disorder prediction 411 430 - -
Lja1g4084 465 MobiDBLite consensus disorder prediction 53 67 - -
Lja1g4084 465 MobiDBLite consensus disorder prediction 14 192 - -
Lja1g4084 465 PANTHER BSD DOMAIN-CONTAINING PROTEIN 3 463 - -
Lja1g4084 465 MobiDBLite consensus disorder prediction 157 179 - -
Lja1g4084 465 SUPERFAMILY BSD domain-like 200 286 IPR035925 -
Lja1g4084 465 MobiDBLite consensus disorder prediction 68 83 - -
Lja1g4084 465 PANTHER BSD DOMAIN-CONTAINING PROTEIN 3 463 - -
Lja1g4084 465 ProSiteProfiles BSD domain profile. 230 282 IPR005607 -
Lja1g4084 465 SMART wurzfinal6 230 282 IPR005607 -
Lja1g4084 465 Gene3D BSD domain 196 291 IPR035925 -
Lja1g4084 465 MobiDBLite consensus disorder prediction 136 156 - -
Lja1g4084 465 Pfam BSD domain 230 286 IPR005607 -
Lja1g4084 465 MobiDBLite consensus disorder prediction 29 50 - -
Lja1g4084 465 MobiDBLite consensus disorder prediction 335 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4084 Lja-Chr1 51864377 51869076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4084 198 282 EF-hand Containing Proteins AT1G69030 30.526 1.50e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4084 - - lja:Lj1g3v1755620.1 864.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4084 1 51864377 51869076 Lja1g4084 1 51864377 51869076 ECH