Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4066 ATGGGGAGTTACAGCAGCTATGCATCTCAACCCTCCCTTGTTGAAATCCCAGACCAAACATACAGTGACGATGAATATGCCAATGTGGATTGGGACAACCTTGGATTTGAACTAATGCCAACTGATTACATGTACATTGATAAATGTTGCGCGGGTCAAAAATTTGTACGAGGACAGCTTAGTCGTTATGGCAACATCGAACTGAGCCCATCAGCTGGGGTTCTAAATTATGGTCAGGGATTGTTTGAAGGCACGAAAGCATGCAGAAGCGAAAATGGGCGATTGCTGCTCTTCCGTCCAGAGGAAAATGCCATCCGCATGAAGATTGGCGCCGAGAGAATGTGCATGCAATCCCCTTCAATCGATCAATTCGTCGATGCTCTCAAGCAAACTGCACTTGCAAACAAGCGTTGGATTCCTCCACCGGGTAAAGGATCATTGTATATGAGGCCTCTCCTCTTAGGAAGTGGTCCAGTTTTGGGTTTGGCTCCTGCACCTGAATACACTTTCCTTGTATATGCTTCCCCTGTTCGTAACTATTTCAAGGAGGGTTCCGCGCCGCTTAGCTTGTTCGTGGAGGAGGATTTTGACCGTGCTTCTCGCCGCGGCACCGGAAGCGTGAAAACCATATCTAACTATGCTCCGGTCTTATTGGCACAACAAAAAGCCAAGGACAGAGGATTTTCGGATGTGTTATACCTTGATTCAGCGACCAAGAAAAATCTGGAGGAGGTCTCTTCTTGTAACATTTTTATTGCCAAGGGAAAATGCATCTCAACACCTGCTACCAATGGAACCATACTTCCCGGAATCACCAGAAAAAGTGTAATTGAAATTGCTGGTGATCTTGGCTATCAGGTAGAAGAGCGTGCTGTAAACGTGGATGAATTGATTGAGGCTGATGAAGTGTTCTGCACAGGAACTGCTGTTGGTGTTGCAGCTGTAGGCAGTATCGCATACCAGGACAGAAGGGTGGAATATAAGACAGGTTCTGGAACCATTTGTCAAGAGCTGTACAAAACTATTTTAGGAATTCAAATGGGTATTATTGAAGATAAGAAGGGGTGGATCGTTGAAATTGATTAA 1086 0.453 MGSYSSYASQPSLVEIPDQTYSDDEYANVDWDNLGFELMPTDYMYIDKCCAGQKFVRGQLSRYGNIELSPSAGVLNYGQGLFEGTKACRSENGRLLLFRPEENAIRMKIGAERMCMQSPSIDQFVDALKQTALANKRWIPPPGKGSLYMRPLLLGSGPVLGLAPAPEYTFLVYASPVRNYFKEGSAPLSLFVEEDFDRASRRGTGSVKTISNYAPVLLAQQKAKDRGFSDVLYLDSATKKNLEEVSSCNIFIAKGKCISTPATNGTILPGITRKSVIEIAGDLGYQVEERAVNVDELIEADEVFCTGTAVGVAAVGSIAYQDRRVEYKTGSGTICQELYKTILGIQMGIIEDKKGWIVEID* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4066 361 Gene3D - 7 188 IPR043131 -
Lja1g4066 361 CDD BCAT_beta_family 67 348 IPR033939 GO:0004084|GO:0009081
Lja1g4066 361 Gene3D - 189 360 IPR043132 -
Lja1g4066 361 ProSitePatterns Aminotransferases class-IV signature. 244 273 IPR018300 GO:0003824
Lja1g4066 361 SUPERFAMILY D-aminoacid aminotransferase-like PLP-dependent enzymes 20 357 IPR036038 GO:0003824
Lja1g4066 361 TIGRFAM ilvE_II: branched-chain amino acid aminotransferase 58 360 IPR005786 GO:0004084|GO:0009081
Lja1g4066 361 Pfam Amino-transferase class IV 80 318 IPR001544 GO:0003824
Lja1g4066 361 PANTHER AMINO ACID AMINOTRANSFERASE 7 361 IPR005786 GO:0004084|GO:0009081
Lja1g4066 361 PANTHER BRANCHED-CHAIN-AMINO-ACID AMINOTRANSFERASE 7 361 - -
Lja1g4066 361 PIRSF BCAT1 9 361 IPR005786 GO:0004084|GO:0009081
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4066 Lja-Chr1 51569068 51591587 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4066 K00826 - gmx:100818776 599.742
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4066 1 51569068 51591587 Lja1g4066 1 51569068 51591587 ECH