Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4047 ATGGCAGAGGAAGCGCACTATGCAGCACCGGCATCGGAATCCCTCAAACGGAAGTACGATGAGCCACCCACCCACCGCCCCACCGGCTTCTCCTCCCCTCATTCCACCGTCTCCGACATCGAGCTCGCCAAGCAGAAAGCTCAAGAAGTCGCTGCTCGTCTCTTCAGCGGTGCTCCTCCTCCCCCAATCGACCTCAAACGCCCTAAACCTGATAACGCTGCTCCTCCTTCCTCCTTCGATTCCATCGATTTGAAGGCTCAATACCCTGTGTCTACTTATCAAACTTCGAGCAAGAAGATAGATATACCCAGTGGTAGAGTTGGTGTGATTATTGGTAAAGGTGGGGAAACCATCAAGTCTCTTCAGTTGCGGTCTGGTGCCAAAATCCAAGTTACCCGTGATATGGATGCTGACCCCAATTCCCCGAATAGGTTGGTTGAGCTTATGGGTAGTCCTGAGGCTATTGCCGATGCTGAGAAACTCATCAATGAAGTTCTTGCTGAGGCTGAGTCTGGGGGTTCTGGCATGATTGGTCGACGGCTGACTGGACAATCTGGGTCGGCTGATGAGTTTTCGATGCAAATCCCGAATAATAAGGTTGGCCTTATAATTGGCAAGGGAGGAGAAACTATAAAGAGTATGCAAGCTGAGTCTGGAGCACGAATTCAGGTGATACCTTTGCATCTTCCCCCAGGTGACCCATCAACAGAAAGAACATTAAAAATTGATGGTTCTCCTGAGCAAATTGAGTCAGCAAAGCAATTGGTTAATCAAATCATCAATGGCGAGAACCGTCCCAGAAATTCAGGTGGTTATTCTCAGCAGGGTTACCAATCCCGACCACCATCTAGCTGGGCTCCCCCTGCTCCTCCTATGCAGCAACCTGGTTATGGCTATATGCAGCCTGGAGCATACTCTGGTCAAGCACCCCAATACAACATGCCTCAGGCCCAATACCCTGGCTATCCTCCCCAGCAAGCTGGCGGATATTCCACCAATTGGGACCAGTCCACCGCTCCACCTAACCAGCCGACAGCTGGTGGCTATGATTACTACAGTCAACAGCCACAGCAGCAGCAAAATCCTGGGGGTTCTGCAGCTTCTGCTGATGGGTCCACATACAATTACAGTCAACCACCTTCCTCTGGTTATAACCATCCAGGACAAGGTTATGGTCAGGACGGCTATAGTGCTTATAATGCGCCACCACAATCGGGGTACGGTCAGCCGCCAACATATGACCAGCAGCAAGGTTATGGCTCTGCTCCCAGCTATGGTAGTAGTAACCCAGCACAAGAGGGCAACACTTCCAGCTATGGAGCGCAAGGAGATTCATCCCAAGCTCCATCTGTTCAACCCTCGACTGCTGCGGCGCAGGGTTACGCTACCAACCAACAACCAAACTCCACCAGTCAGCAAGGTTATGGAGCCCCACCCCCAACCTCCCAAGCAGCTTATGGCAATCAACAACAGTCTGGTTATGGTTATGGACCCCCTCAACCTGTGAAGCCAAGTGGCACTCCACCTGTTTATGGACAATCACAGTCGCCCAGCACAGCAGGAGGCTATGGTCAGTCAGCATATCCTCCTGCACAACCCTCACCTGCCGGGTATGCTCAACCAGACCAAAAAGCGCCCGCATCTGGTTATGGTGTTGCAGCGCAACCAGGGTATGGTCCTCAATCATATGGTGCTCCTCAGGGTAGTTATGGTCAGGCACCGCCATCATACGGCAACAGTTCTTATGGTGCTGGTTATGCTCAGACACCTGCTTATGCTAGTGATGGTACTAATGGAGCACCTGCACAGGCGGCGGCAGCAGCTCAACAGGGTGGTGTTGCTAAAGCTTCACCACAGAGTTGA 1863 0.5196 MAEEAHYAAPASESLKRKYDEPPTHRPTGFSSPHSTVSDIELAKQKAQEVAARLFSGAPPPPIDLKRPKPDNAAPPSSFDSIDLKAQYPVSTYQTSSKKIDIPSGRVGVIIGKGGETIKSLQLRSGAKIQVTRDMDADPNSPNRLVELMGSPEAIADAEKLINEVLAEAESGGSGMIGRRLTGQSGSADEFSMQIPNNKVGLIIGKGGETIKSMQAESGARIQVIPLHLPPGDPSTERTLKIDGSPEQIESAKQLVNQIINGENRPRNSGGYSQQGYQSRPPSSWAPPAPPMQQPGYGYMQPGAYSGQAPQYNMPQAQYPGYPPQQAGGYSTNWDQSTAPPNQPTAGGYDYYSQQPQQQQNPGGSAASADGSTYNYSQPPSSGYNHPGQGYGQDGYSAYNAPPQSGYGQPPTYDQQQGYGSAPSYGSSNPAQEGNTSSYGAQGDSSQAPSVQPSTAAAQGYATNQQPNSTSQQGYGAPPPTSQAAYGNQQQSGYGYGPPQPVKPSGTPPVYGQSQSPSTAGGYGQSAYPPAQPSPAGYAQPDQKAPASGYGVAAQPGYGPQSYGAPQGSYGQAPPSYGNSSYGAGYAQTPAYASDGTNGAPAQAAAAAQQGGVAKASPQS* 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4047 620 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 51 603 - -
Lja1g4047 620 Pfam KH domain 192 257 IPR004088 GO:0003723
Lja1g4047 620 Pfam KH domain 99 164 IPR004088 GO:0003723
Lja1g4047 620 CDD KH-I 190 256 - -
Lja1g4047 620 Gene3D K Homology domain, type 1 90 185 IPR036612 GO:0003723
Lja1g4047 620 Gene3D K Homology domain, type 1 186 283 IPR036612 GO:0003723
Lja1g4047 620 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 191 263 IPR036612 GO:0003723
Lja1g4047 620 MobiDBLite consensus disorder prediction 398 496 - -
Lja1g4047 620 MobiDBLite consensus disorder prediction 28 42 - -
Lja1g4047 620 ProSiteProfiles Type-1 KH domain profile. 188 256 - -
Lja1g4047 620 MobiDBLite consensus disorder prediction 262 620 - -
Lja1g4047 620 ProSiteProfiles Type-1 KH domain profile. 95 162 - -
Lja1g4047 620 MobiDBLite consensus disorder prediction 565 596 - -
Lja1g4047 620 PANTHER K DOMAIN-CONTAINING PROTEIN-RELATED 51 603 - -
Lja1g4047 620 MobiDBLite consensus disorder prediction 262 282 - -
Lja1g4047 620 MobiDBLite consensus disorder prediction 306 388 - -
Lja1g4047 620 MobiDBLite consensus disorder prediction 507 525 - -
Lja1g4047 620 CDD KH-I 97 162 - -
Lja1g4047 620 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 88 172 IPR036612 GO:0003723
Lja1g4047 620 SMART kh_6 187 261 IPR004087 GO:0003676
Lja1g4047 620 SMART kh_6 94 167 IPR004087 GO:0003676
Lja1g4047 620 MobiDBLite consensus disorder prediction 1 81 - -
Lja1g4047 620 MobiDBLite consensus disorder prediction 10 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4047 Lja-Chr1 51257875 51263960 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4047 K13210 - gmx:100813135 768.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4047 1 51257875 51263960 Lja1g4047 1 51257875 51263960 ECH