Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4045 ATGGCTCTTCTGAGTCGAACCGCCTCACGCTTCCCACACCTGGTGTCACCTCAGCGGGTGGTTTCCCTTCACACAACCCTCCCTTCCTTCTCCTCACCCACACCCTCACCCTATGCTCCGCCATCGCCTCCATCGGCTTCCTCCCCCACCGGCGTCCCCAAGGCGGTGGAGTACGTCATCTCCAAGGTCGACGATCTCATGAATTGGGCTCGCACCGGCTCCATCTGGCCCATGACCTTCGGCCTCGCCTGCTGCGCCGTCGAAATGATGCACACCGGTGCCGCCCGCTACGATCTCGATCGCTTCGGGATCATTTTCAGGCCTAGCCCTCGTCAGTCTGATTGCATGATCGTCGCTGGAACTCTCACCAACAAGATGGCCCCTGCTCTTCGCAAGGTTTATGACCAAATGCCTGAGCCTAGGTGGGTCATCTCAATGGGAAGCTGTGCTAACGGTGGAGGATACTACCACTACTCTTACTCTGTTGTAAGGGGATGTGACAGGATTGTTCCTGTTGATATATATGTTCCGGGCTGTCCTCCAACTGCTGAGGCTCTGCTGTATGGACTCCTTCAGCTGCAAAAGAAGATCAATAGGCGCAAGGACTTCCTCCATTGGTGGACACAGTGA 630 0.5635 MALLSRTASRFPHLVSPQRVVSLHTTLPSFSSPTPSPYAPPSPPSASSPTGVPKAVEYVISKVDDLMNWARTGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKINRRKDFLHWWTQ* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4045 209 Pfam NADH ubiquinone oxidoreductase, 20 Kd subunit 84 193 IPR006137 GO:0051536
Lja1g4045 209 Gene3D - 55 209 - -
Lja1g4045 209 MobiDBLite consensus disorder prediction 31 51 - -
Lja1g4045 209 PANTHER NADH DEHYDROGENASE [UBIQUINONE] IRON-SULFUR PROTEIN 7, MITOCHONDRIAL 1 209 - -
Lja1g4045 209 SUPERFAMILY HydA/Nqo6-like 57 201 - -
Lja1g4045 209 ProSitePatterns Respiratory-chain NADH dehydrogenase 20 Kd subunit signature. 165 181 IPR006138 GO:0008137|GO:0048038|GO:0051539
Lja1g4045 209 Hamap NAD(P)H-quinone oxidoreductase subunit K, chloroplastic [ndhK]. 42 198 IPR006138 GO:0008137|GO:0048038|GO:0051539
Lja1g4045 209 MobiDBLite consensus disorder prediction 33 48 - -
Lja1g4045 209 PANTHER NADH DEHYDROGENASE 1 209 - -
Lja1g4045 209 TIGRFAM nuoB_fam: NADH-quinone oxidoreductase, B subunit 59 199 IPR006138 GO:0008137|GO:0048038|GO:0051539
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4045 Lja-Chr1 51247633 51250706 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4045 K03940 - gmx:100802267 359.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4045 1 51247633 51250706 Lja1g4045 1 51247633 51250706 ECH