Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4029 ATGGATTCTTCACAAGGCTCCACATTGGCTGGTTTGGTGGACAATGCCTCCATTCAGAAGGACCAATCTTGTTTTGATGGTGTTCCTGTCTATGTTAAGGAGCTTGTTGCCGGAGGTGTTGCCGGTGCTCTTTCTAAGACCGCCGTCGCGCCTCTCGAACGGGTTAAGATACTCTGGCAGACAAGGACAGGAGGATTTCACACTCTTGGTGTTTGCCAATCTTTGAATAAGTTGGTAAAGCATGAAGGTTTTCTAGGATTATATAAAGGAAATGGAGCTAGTGCTGTCCGGATTGTTCCGTATGCAGCCTTGCATTTTATGACATATGAGCGGTATAAAAGTTGGATCTTGAATAATTGTCCCGCGTTAGGATCAGGTCCTTTTATTGATCTTTTAGCTGGCTCCGCAGCCGGAGGAACTTCAGTTTTATGTACATACCCCTTGGATCTTGCTCGTACCAAACTTGCTTATCAGGTGATAGACACAAGAGGAACTATCAAAGATGGTATAAAGGGAGTTCGTCCTCAACCTGCACATATTGGGATTAAAAGCGTGCTGACAAGTGTCTATAGGGAAGGGGGAGCTCGTGGACTTTATAGGGGTGTAGGACCAACCATTACTGGAATTCTTCCGTATGCTGGTTTAAAGTTCTACACGTATGAGAAATTGAAGATGCATGTTCCTGAAGAACATCAAAAGTCCATTTTGATGCGCCTTTCTTGTGGAGCTCTAGCTGGATTGTTTGGACAGACCCTAACCTACCCTTTAGATGTTGTCAAGAGACAGATGCAGGTTGGAAGCCTGCAAAATGCAGCTCATGAAGATACCAGATACAGAAATACATTAGATGGTCTTAGGAAGATTGTTCGTAATCAAGGGTGGAGACAGTTGTTTGCAGGCGTAAGCATTAACTATATAAGGATTGTCCCGTCCGCCGCAATCAGTTTCACAGCATATGATACGATGAAGGCTTGGCTTGGCATACCGCCCCAACAAAAGTCTCGATCAGTTTCGGCAACATAA 1023 0.4457 MDSSQGSTLAGLVDNASIQKDQSCFDGVPVYVKELVAGGVAGALSKTAVAPLERVKILWQTRTGGFHTLGVCQSLNKLVKHEGFLGLYKGNGASAVRIVPYAALHFMTYERYKSWILNNCPALGSGPFIDLLAGSAAGGTSVLCTYPLDLARTKLAYQVIDTRGTIKDGIKGVRPQPAHIGIKSVLTSVYREGGARGLYRGVGPTITGILPYAGLKFYTYEKLKMHVPEEHQKSILMRLSCGALAGLFGQTLTYPLDVVKRQMQVGSLQNAAHEDTRYRNTLDGLRKIVRNQGWRQLFAGVSINYIRIVPSAAISFTAYDTMKAWLGIPPQQKSRSVSAT* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4029 340 ProSiteProfiles Solute carrier (Solcar) repeat profile. 233 325 IPR018108 -
Lja1g4029 340 Pfam Mitochondrial carrier protein 31 118 IPR018108 -
Lja1g4029 340 Pfam Mitochondrial carrier protein 233 326 IPR018108 -
Lja1g4029 340 Pfam Mitochondrial carrier protein 127 227 IPR018108 -
Lja1g4029 340 PRINTS Mitochondrial carrier protein signature 90 110 IPR002067 GO:0055085
Lja1g4029 340 PRINTS Mitochondrial carrier protein signature 47 61 IPR002067 GO:0055085
Lja1g4029 340 PRINTS Mitochondrial carrier protein signature 140 158 IPR002067 GO:0055085
Lja1g4029 340 PRINTS Mitochondrial carrier protein signature 242 264 IPR002067 GO:0055085
Lja1g4029 340 PRINTS Mitochondrial carrier protein signature 199 217 IPR002067 GO:0055085
Lja1g4029 340 PRINTS Mitochondrial carrier protein signature 34 47 IPR002067 GO:0055085
Lja1g4029 340 ProSiteProfiles Solute carrier (Solcar) repeat profile. 125 226 IPR018108 -
Lja1g4029 340 PANTHER GRAVES DISEASE MITOCHONDRIAL SOLUTE CARRIER PROTEIN-LIKE 8 334 - -
Lja1g4029 340 Gene3D Mitochondrial carrier domain 29 327 IPR023395 -
Lja1g4029 340 SUPERFAMILY Mitochondrial carrier 32 321 IPR023395 -
Lja1g4029 340 PANTHER SOLUTE CARRIER FAMILY 25 8 334 - -
Lja1g4029 340 ProSiteProfiles Solute carrier (Solcar) repeat profile. 29 115 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4029 Lja-Chr1 51052874 51058342 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4029 113 333 Organic Solute Cotransporters AT4G26180 28.139 3.17e-18 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4029 - - gmx:100784421 595.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4029 1 51052874 51058342 Lja1g4029 1 51052874 51058342 ECH