Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4022 ATGGCGGAACCCTACGACCCATACGCTCCTTCCACCGCCGCTCCCGCTGACGGAGCAAGCATTGCGAGGAGTAGCTTTGCTGGTTACATTCCATCTGAGCCAGCATCCTTGGCTTCGCCTTATCCTCGTTTCTCGAATTCGGCTGAATTGCGCGGAATCGGAGCAGATTACCTACAGAATGATATAAACTTGTCGAGGGTGGGGCCGTATAGTAGTGTTGATGATGCTGTTAGCTCCAGAGTTCTTTCTGAACCTAACATCAAGGGTTATTCGCCTCTTGACGATCCTGTTCTGAGGACGAAACGGGATACTTCATTGGGCGTTAATCCTGATGTGAGCAGTGAAAGGCCAATCCCTAAAGCCAATCGCGAAGGTCTTGCGGATTCAAACGTTCTATTTGTGGATGGTCTTCCGAGAGACTGCACTAGAAGGGAAGTTGGCCATCTTTTCCGTCCCTTTATTGGCTATAAGGATATCAGAGTTGTTCACAAAGAGCCTAGACGTAGTGGAGACAAGGCTATGGTTTTGTGTTTTGTAGAGTTTGATGACTCCAAATGTGCTCTCACTGCCATGGAAGCTCTACAAGGCTACAAGTTTGATGATAAAAAACCAGATTCACGGACCTTAAAAATCCAGTTTGCGCACTTTCCTTTCCGCCCGCCAGCTGATAACGGGACAACTACAACTTAA 690 0.4783 MAEPYDPYAPSTAAPADGASIARSSFAGYIPSEPASLASPYPRFSNSAELRGIGADYLQNDINLSRVGPYSSVDDAVSSRVLSEPNIKGYSPLDDPVLRTKRDTSLGVNPDVSSERPIPKANREGLADSNVLFVDGLPRDCTRREVGHLFRPFIGYKDIRVVHKEPRRSGDKAMVLCFVEFDDSKCALTAMEALQGYKFDDKKPDSRTLKIQFAHFPFRPPADNGTTTT* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4022 229 CDD RRM_RBPMS_like 130 212 - -
Lja1g4022 229 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 130 216 IPR000504 GO:0003723
Lja1g4022 229 PANTHER PROTEIN COUCH POTATO 8 222 - -
Lja1g4022 229 SUPERFAMILY RNA-binding domain, RBD 124 214 IPR035979 GO:0003676
Lja1g4022 229 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 8 222 - -
Lja1g4022 229 SMART rrm1_1 131 207 IPR000504 GO:0003723
Lja1g4022 229 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 132 203 IPR000504 GO:0003723
Lja1g4022 229 MobiDBLite consensus disorder prediction 92 121 - -
Lja1g4022 229 Gene3D - 127 216 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4022 Lja-Chr1 50961979 50964836 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4022 - - gmx:100816255 295.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4022 1 50961979 50964836 Lja1g4022 1 50961979 50964836 ECH