Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4014 ATGAAGTCCAAGACGAGGAAGAAGGAGCTTGCTGCGAAGAAGCAGCAGAACCACCAGGGCGGTGGTGGTGGTGGCGGCAGAGTAGAACAACCAAATGAAGAGAAAAAAGTGACCGCCGTGAAGTTGAAGGGAGCGGAGAGGTCAGCTCACTTCGCACGGAGAGAGGCAGCGAAGATCTTGAAAACTGTTCTCGAAGGTGACGCTAAGCGCCGCGCACTTGCCTCCATCAAAACCCTCATCTATAAACCTTCCATCAGAAACAAGAAGGCCACCTTCGCTCTCATCTGTCAAACCCTCAAGCATCTTCCTATTATCAAGGATGTCTTGGAAGCTTCTTCTATTCTCAATACCAAGTGGAAGAAGCATCAAGAATTGATTTACATCATTCTCTATGATATACTTTTCGGTCAGGAAGTTTCAGTAGTTGGTGATGCTGAGAAGTACCTTATGCGCCACAAAGGCGCTCTACATGCAACTCTGAAACAGCTTTTGGCACAGAGAAAGGTGAAAACGGTTAAGCAGCTGGTTGCTCAATACCATGTTCCAGAGATTTCTGTACCTCGTTATGTTCGTGTGAATACTCTTAAACTGGATGTAGAATCTGCCTTACTTGAACTTCGGGAAAAATACTCGGTTCAAAAGGACGATTTACTGCCTGACTTGCTGATACTACCGCCAGGAACTGATTTACACGATCATCCTCTTGTCAAGAATGGAAGTGTCTTTTTGCAAGGTAAGGCAAGTTCCATGGTGGCACCAGCCCTTAGCCCTGAACCAGGATGGGAGGTTCTTGATGCATGTGCAGCACCAGGAAATAAAACAGTCCACCTTGCTGCCCTTATGAAGAGAAAGGGTAGGATTATAGCATGTGAGCTGCACAAAGAAAGGATTATGCGTTTGAAAGACACTATAAAGCTATCTGGGGCTTCTAACATACAAGTTCTCAATGAGGATTTCTTGAAAATAAATCCCACGGATCCTCCATATTCTAAGGTGAAAGCTATTCTTTTGGATCCTTCCTGCTCTGGTTCTGGTACTGCTTCTTCAAGACTAGACCATCTACTCCCATCTAAAGCAGCAGGTCAGGATGTTGATATGGAAAGATTGAACAAGCTTGCAGCTTTTCAGAGAAAGGCTCTTCAGCATGCTTTACTTTTTCCAGCTGTGGAAAGAATTGTCTACAGCACTTGTTCAATCAACCAAATTGAAAATGAAGATGTCATCACATCTGTCCTTCCCATAGCCGAATCGAATGGATTTGAGCTGGTAAAGCCTTTCCCTGAGTGGCAATGCCGTGGTCTTCCAGTGTTTGAAGGATCTGAACACCTGATTCGGACAGATCCTGCCAAACACGGTGAAGGTTTCTTTATTGCCTTGTTTTCCAGAAAGGATGCTAATGTTTCAGTGAGGTCAAATAAGAAAGAAAATAGAACTAGAGTGCAAAGGAAGAAACCTATACCCTTGTTTATTACCACTAACCCCTTCAAAATGTGGTTATTTGATAACCTGAGCAGGTCCCGCTGTTGA 1527 0.4434 MKSKTRKKELAAKKQQNHQGGGGGGGRVEQPNEEKKVTAVKLKGAERSAHFARREAAKILKTVLEGDAKRRALASIKTLIYKPSIRNKKATFALICQTLKHLPIIKDVLEASSILNTKWKKHQELIYIILYDILFGQEVSVVGDAEKYLMRHKGALHATLKQLLAQRKVKTVKQLVAQYHVPEISVPRYVRVNTLKLDVESALLELREKYSVQKDDLLPDLLILPPGTDLHDHPLVKNGSVFLQGKASSMVAPALSPEPGWEVLDACAAPGNKTVHLAALMKRKGRIIACELHKERIMRLKDTIKLSGASNIQVLNEDFLKINPTDPPYSKVKAILLDPSCSGSGTASSRLDHLLPSKAAGQDVDMERLNKLAAFQRKALQHALLFPAVERIVYSTCSINQIENEDVITSVLPIAESNGFELVKPFPEWQCRGLPVFEGSEHLIRTDPAKHGEGFFIALFSRKDANVSVRSNKKENRTRVQRKKPIPLFITTNPFKMWLFDNLSRSRC* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4014 508 Gene3D Sun protein; domain 3 179 243 - -
Lja1g4014 508 PRINTS RNA (C5-cytosine) methyltransferase signature 235 249 IPR023267 GO:0001510
Lja1g4014 508 PRINTS RNA (C5-cytosine) methyltransferase signature 264 274 IPR023267 GO:0001510
Lja1g4014 508 PRINTS RNA (C5-cytosine) methyltransferase signature 445 462 IPR023267 GO:0001510
Lja1g4014 508 PRINTS RNA (C5-cytosine) methyltransferase signature 333 345 IPR023267 GO:0001510
Lja1g4014 508 PRINTS RNA (C5-cytosine) methyltransferase signature 389 405 IPR023267 GO:0001510
Lja1g4014 508 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 178 463 IPR001678 GO:0008168
Lja1g4014 508 PANTHER BNAA09G04380D PROTEIN 40 488 - -
Lja1g4014 508 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 186 462 IPR029063 -
Lja1g4014 508 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 40 488 IPR023267 GO:0001510
Lja1g4014 508 Pfam 16S rRNA methyltransferase RsmB/F 254 460 IPR001678 GO:0008168
Lja1g4014 508 Gene3D Vaccinia Virus protein VP39 244 470 IPR029063 -
Lja1g4014 508 MobiDBLite consensus disorder prediction 1 38 - -
Lja1g4014 508 CDD AdoMet_MTases 263 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4014 Lja-Chr1 50903398 50908273 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4014 K15264 - gmx:100775620 774.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4014 1 50903398 50908273 Lja1g4014 1 50903398 50908273 ECH