Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4013 ATGGATATCAGGTTGATGGGTCTAGATTCTCCACTGCTGAACACACTGCACCACATCATGGACCTCCCAGACGACTCCACCGAGAAGAACTCTCACGCTCCCACCCGGACCTACCTCCGCGACGCCAAGGCAATGGCAGCCACCCCTGCGGACGTGAAGGAGTACCCGAGCTCGTACGTGTTCGTGATCGACATGCCGGGGTTGAAGTCCGGTGACATCAAGGTTCAGGTGGAGGATGACAATGTGCTTCTCATAAGTGGTGAGAGGAAGAGGGATGAGGAGAAAGAAGGGTCCAAGTATGTGAGGATGGAGAGGAGGGTTGGCAAGTTCATGAGGAAGTTTGTGCTCCCGGAGAATGCTAATGTCCATGCCATTTCTGCTGTTTGCCAAGATGGTGTGCTCACTGTCACGGTGAACAAGCTGCCACCTCCTGAGCCTAAGAAGCCCAAGACCATTGAGGTTAAGGTTGCTTGA 474 0.538 MDIRLMGLDSPLLNTLHHIMDLPDDSTEKNSHAPTRTYLRDAKAMAATPADVKEYPSSYVFVIDMPGLKSGDIKVQVEDDNVLLISGERKRDEEKEGSKYVRMERRVGKFMRKFVLPENANVHAISAVCQDGVLTVTVNKLPPPEPKKPKTIEVKVA* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4013 157 Pfam Hsp20/alpha crystallin family 51 155 IPR002068 -
Lja1g4013 157 PANTHER 17.1 KDA CLASS II HEAT SHOCK PROTEIN-LIKE 7 157 - -
Lja1g4013 157 PANTHER HEAT-SHOCK PROTEIN 20 FAMILY MEMBER 7 157 - -
Lja1g4013 157 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 41 157 IPR002068 -
Lja1g4013 157 SUPERFAMILY HSP20-like chaperones 31 149 IPR008978 -
Lja1g4013 157 Gene3D - 9 156 IPR008978 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4013 Lja-Chr1 50902406 50903021 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4013 K13993 - pvy:116117493 264.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4013 1 50902406 50903021 Lja1g4013 1 50902406 50903021 ECH