Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4010 ATGGCCGTGGCAGTGCGGAAAGCCACCGTGAAACCATCCTCCATTGTAACCACCATCACCTCCCTCCTTCAAACACCAGATTCTGAACCTCTGAAAAAATTCTCATGCTACCTCACTCCAAGCTTGGTTACCCAAGTGATCAAGAACACACACAACCCCCACCATGCTCTCTTCTTCTTCAACTGGGCCTCCAACCCTCAACCCAACCCCAACAACTACTCCCACCCTCGCTCCTGCTACGCCGCCATCACCGACGTCTTGCTTTCCCACTCCCTTTTCTCCACCGCCGACTCCCTCCTCCGCCGCTCCAACAAACTCTCCGACTTCCTCGCCTCCAAATTCATCAACGCTTTCGGCGACCGTGGCGATATCAGAGGCGCCATTCACTGGTTCCACAAAGCCAAAGCCTCTGGGCCTTGCGCGTTGTCTTGTAATGCCGTACTGGGTGTGTTGGTTAGAGCCAACCGGGTCAACCTGGCCAAGGCAATTTACGACCAGGTTGTGAAGGAAGCTCTGGTGGAGCCTGATGTTTTCACTTACACCACCATGATTAGGGGATTCTGTAAAATGGGCATGGTCGAGAGTGCGCGGAAGGTGTTCGATGAAATGCGCTGTGAGCCTAACGCGATAACTTACAATACAATGATCCACGGGCTTTGCAAGAAAGGTGAAATGGATGGTGCCATGAGGGTTTTCAATCGATTCGCGGAGAGTAAGAGTTGCAGACCGGATGTCGTGACTTTTACCACTTTGATTGATGGGTATTCCAAGAGAGGTGAGGTGCAAGAGGCGCTGAACTGCATGAAGGAGATGCAGGAACAAGGTTGTCAGCCCAATGTTGTGACCTACAATGCGTTGATTGAAGGTCTTTGTTTGAGTGGGAATGTGGATGAGGCCAAGAGGATGATGAGTAAGATGCGGCTAAAGGGTATCAAAGACAATGTTGCCACAAACACTAGCATGTTGAAGGGCTTTTGCATGGTTGGGAGGTCTGAGGAAGCTATCAAGCATATGAAGGAAATGGTTTCTCGAGGGATGGATCTGGATGTGAAAGCATACAGTGTTATTGTCAATGAGTATTGCAAAATAGGAAAACCAAGTGAAGCAGTTTCAATTCTAAGGGAAATGGTGGCTAAAAGGATGAAGCCAAGTGTGTCAAGTTTCAATGCAGTGTTTAGAGTTCTTGTGGCTGAGAGGAAGCTTGAGGAAGCAGTTCTTCTTTTAAAGAACATGCCTCGAATGGGGTGCTCACCGAACTTCTTATCATACAGTATTGTGATATGTGGTCTCTGTAAAGTGAAAGGTAGGATGCAACTGGTTGAAGAGCTTGTTTCGAGCATGCTCCAGAGTGGACATAACTTGGATGCCACCATGTACAACTGCTTGCTTGGGGGATATTGTGAAGATGGGGATGAAGAGATGGCATTGAAGACGGTATATGACATGATTGACAAGAGCTTTCTGTTCAACAAAGACACTTACTGCACTTTTGTTAAGGAGTTGTGTGCAAAGGGGAAAGTGAAAGAGGAGTATTTGAAGAGATGTGTAGATAACACCTTGTAA 1563 0.4773 MAVAVRKATVKPSSIVTTITSLLQTPDSEPLKKFSCYLTPSLVTQVIKNTHNPHHALFFFNWASNPQPNPNNYSHPRSCYAAITDVLLSHSLFSTADSLLRRSNKLSDFLASKFINAFGDRGDIRGAIHWFHKAKASGPCALSCNAVLGVLVRANRVNLAKAIYDQVVKEALVEPDVFTYTTMIRGFCKMGMVESARKVFDEMRCEPNAITYNTMIHGLCKKGEMDGAMRVFNRFAESKSCRPDVVTFTTLIDGYSKRGEVQEALNCMKEMQEQGCQPNVVTYNALIEGLCLSGNVDEAKRMMSKMRLKGIKDNVATNTSMLKGFCMVGRSEEAIKHMKEMVSRGMDLDVKAYSVIVNEYCKIGKPSEAVSILREMVAKRMKPSVSSFNAVFRVLVAERKLEEAVLLLKNMPRMGCSPNFLSYSIVICGLCKVKGRMQLVEELVSSMLQSGHNLDATMYNCLLGGYCEDGDEEMALKTVYDMIDKSFLFNKDTYCTFVKELCAKGKVKEEYLKRCVDNTL* 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4010 520 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 25 509 - -
Lja1g4010 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 419 454 IPR002885 -
Lja1g4010 520 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 25 509 - -
Lja1g4010 520 Pfam PPR repeat 173 204 IPR002885 -
Lja1g4010 520 Pfam PPR repeat 205 233 IPR002885 -
Lja1g4010 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 279 313 IPR002885 -
Lja1g4010 520 Gene3D Tetratricopeptide repeat domain 449 515 IPR011990 GO:0005515
Lja1g4010 520 Gene3D Tetratricopeptide repeat domain 307 378 IPR011990 GO:0005515
Lja1g4010 520 Gene3D Tetratricopeptide repeat domain 379 448 IPR011990 GO:0005515
Lja1g4010 520 Gene3D Tetratricopeptide repeat domain 23 200 IPR011990 GO:0005515
Lja1g4010 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 384 418 IPR002885 -
Lja1g4010 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 314 348 IPR002885 -
Lja1g4010 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 455 489 IPR002885 -
Lja1g4010 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 208 243 IPR002885 -
Lja1g4010 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 176 206 IPR002885 -
Lja1g4010 520 Gene3D Tetratricopeptide repeat domain 201 306 IPR011990 GO:0005515
Lja1g4010 520 TIGRFAM PPR: pentatricopeptide repeat domain 178 207 IPR002885 -
Lja1g4010 520 TIGRFAM PPR: pentatricopeptide repeat domain 319 349 IPR002885 -
Lja1g4010 520 TIGRFAM PPR: pentatricopeptide repeat domain 387 419 IPR002885 -
Lja1g4010 520 TIGRFAM PPR: pentatricopeptide repeat domain 458 488 IPR002885 -
Lja1g4010 520 TIGRFAM PPR: pentatricopeptide repeat domain 352 384 IPR002885 -
Lja1g4010 520 TIGRFAM PPR: pentatricopeptide repeat domain 246 280 IPR002885 -
Lja1g4010 520 TIGRFAM PPR: pentatricopeptide repeat domain 210 245 IPR002885 -
Lja1g4010 520 TIGRFAM PPR: pentatricopeptide repeat domain 281 312 IPR002885 -
Lja1g4010 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 244 278 IPR002885 -
Lja1g4010 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 349 383 IPR002885 -
Lja1g4010 520 SUPERFAMILY HCP-like 119 347 - -
Lja1g4010 520 Pfam PPR repeat family 314 362 IPR002885 -
Lja1g4010 520 Pfam PPR repeat family 243 291 IPR002885 -
Lja1g4010 520 Pfam PPR repeat family 455 502 IPR002885 -
Lja1g4010 520 Pfam PPR repeat family 383 432 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g4010 6 520 Glycosyltransferase AT1G05670 26.426 3.46e-46 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4010 - - aprc:113866240 780.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4010 1 50837259 50838895 Lja1g4010 1 50837259 50838895 ECH