Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4007 ATGAAACCATCCGCACTATCATCACTGCAGCTCACCTTCAAATCTTTCAATCTCCACCACCGCACTCTCACTCGCACCTCTAATCTCCCCTTTCTCTCCACCACCAACCGCCGAATCCACTCTTCCTCCTCCCCTCCTCCTCCGATCATGTCCGCCGCTGCAACATCAGAACGCGCCCGTGCACCACCCGCCATTCCAATCCCCTCTCCTCCTCTCACCAAGTTCAAGATCGCCCTCTGTCAACTCTCCGTCTCCGCCGATAAGGACCGCAACATCGCCCACGCTCGCTCCGCCATTCACCACGCCGCCGCAAACGGCGCCAAGCTCGTCGTTCTACCCGAAATTTGGAACAGTCCTTATTCCAATGACAGTTTCCCAATCTACGCTGAGGATATTGATGCCGGTCTCAATGCTTCTCCTTCAACTGCCATGCTCTCTGAACTCTCTCGTCTCTTGAAGGTCACCATCGTTGGTGGTTCTATCCCTGAACGCTCTGGAGATCGCTTGTACAACACTTGCTGTGTGTTTGGAACTGATGGAAACCTAAAAGCCAAGCACCGCAAGATACATCTTTTTGACATTGATATCCCTGGGAAGATTACTTTTATTGAATCCAAAACTCTTAGTGCTGGGGAGACTCCAACTATTGTGGACACAGAGGTTGGGCGCATTGGCATAGGGATCTGTTATGACATTCGATTTCCAGAACTAGCAATGATATATGCAGCACGAGGTGCTCACTTGCTTTTGTATCCTGGGGCATTTAACATGACAACTGGACCATTGCATTGGGAGTTATTGCAGAGGGCAAGGGCTATGGATAACCAGATATATGTGGCAACATGTTCACCCGCTCGGGATACTGAATCTGGTTATGTAGCTTGGGGTCACTCAACTCTTGTTGGACCATTTGGAGAAGTTATGGCTACTACAGAACATGAGGAAGCAACCATCATAGCTGAAATTGATTATTCAATATTGGAGCAGAGAAGGACAAGTGTCCCAGTGACAAAGCAAAGAAGAGGTGATCTTTATCAATTGGTGGATCTTCAGAGGCTGAATTCCTCCTAG 1071 0.4902 MKPSALSSLQLTFKSFNLHHRTLTRTSNLPFLSTTNRRIHSSSSPPPPIMSAAATSERARAPPAIPIPSPPLTKFKIALCQLSVSADKDRNIAHARSAIHHAAANGAKLVVLPEIWNSPYSNDSFPIYAEDIDAGLNASPSTAMLSELSRLLKVTIVGGSIPERSGDRLYNTCCVFGTDGNLKAKHRKIHLFDIDIPGKITFIESKTLSAGETPTIVDTEVGRIGIGICYDIRFPELAMIYAARGAHLLLYPGAFNMTTGPLHWELLQRARAMDNQIYVATCSPARDTESGYVAWGHSTLVGPFGEVMATTEHEEATIIAEIDYSILEQRRTSVPVTKQRRGDLYQLVDLQRLNSS* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4007 356 SUPERFAMILY Carbon-nitrogen hydrolase 72 340 IPR036526 -
Lja1g4007 356 Pfam Carbon-nitrogen hydrolase 76 327 IPR003010 GO:0006807
Lja1g4007 356 PANTHER NITRILASE-RELATED 37 355 - -
Lja1g4007 356 PANTHER OMEGA-AMIDASE, CHLOROPLASTIC-LIKE 37 355 - -
Lja1g4007 356 CDD nit 76 341 IPR045254 GO:0016811
Lja1g4007 356 ProSiteProfiles Carbon-nitrogen hydrolase domain profile. 75 324 IPR003010 GO:0006807
Lja1g4007 356 Gene3D - 72 350 IPR036526 -
Lja1g4007 356 ProSitePatterns Uncharacterized protein family UPF0012 signature. 225 245 IPR001110 -
Lja1g4007 356 MobiDBLite consensus disorder prediction 36 60 - -
Lja1g4007 356 MobiDBLite consensus disorder prediction 36 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4007 Lja-Chr1 50814796 50819733 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4007 K13566 - gmx:100817195 530.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4007 1 50814796 50819733 Lja1g4007 1 50814796 50819733 ECH