Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4004 ATGGCTTCTGCTTCAGTTCCAATGGCTTTGTCACTGTCCTCTGTTACCCACAACAAACTGAACAACCCATCCTCCCAATCCTTTTTCCAACCATTACCCATTAGACAGAACAAGACCCTCTTTGCAAAGCCAAGTTCAAAATCCAAACATGGGATTCATGCATCTTTGAAGGAGAAGGCAGTTGCAGGACTCACAGCTGCTTCCATGACTGCTTCCATGGTGATTCCAGAGGTGGCTAATGCAGCTGGAAATGATCTCACCCCATCTCTCAAGAACTTTCTGCTCAGCATTGCAGCTGGTGGAGTTGTGCTAACAGCCATATTTGCAGCAGTTATTGGTGTTTCCAACTTTGATCCTGTTAAGAGAGCTTGA 372 0.457 MASASVPMALSLSSVTHNKLNNPSSQSFFQPLPIRQNKTLFAKPSSKSKHGIHASLKEKAVAGLTAASMTASMVIPEVANAAGNDLTPSLKNFLLSIAAGGVVLTAIFAAVIGVSNFDPVKRA* 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4004 123 PANTHER OS07G0673550 PROTEIN 2 123 - -
Lja1g4004 123 PANTHER OS07G0673550 PROTEIN 2 123 - -
Lja1g4004 123 Gene3D Single helix bin 85 123 - -
Lja1g4004 123 Pfam Photosystem II reaction centre X protein (PsbX) 87 122 IPR009518 GO:0009523|GO:0015979|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4004 Lja-Chr1 50754872 50755697 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4004 - - gmx:100305487 167.162
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4004 1 50754872 50755697 Lja1g4004 1 50754872 50755697 ECH