Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g4003 ATGGGTAATGTGTTCCAAAAGTTAGGCCATGACGAAACAGAACAACATAACCTTGCCAATGATGACCAGAAGCAGAACAATGATGCTTCCTGGTATGAGGAATCTCTCAGTGATGATCTCAAATGGTCTTTTGCCTTGAACAGTGTGCTTCATAGAGGGACAAGCAAATATCAAGAGTTTGCTCTCCTAGATAGCAAGCGATTTGGAAAGGTGCTTGTGATTGATGGAATGTTGCAGAGTGCTGAAGTGGATGAATTCATTTATCACGAATGCTTGATTCATCCCCCTCTCTTGTCTCATCCAAACCCCAAAAAGGTGTTTATAATGGGAGGAGGCGAAGGGTCATCAGCTAGGGAAATTCTGAAGCACAAGTCAATTGAGAGCGTAACCATGTGTGATATAGATCAGGATGTGGTAGATTTCTGTAGAAAATATTTGACTGAAAATAAGGAGGCTTTTGCTAATGAGAAGTTCAACCTGATCATCAATGATGCCAAAGCTGAATTGGAGAAGAGCGAAGAGAAGTTTGATATCATTGTTGGAGACTTGGCGGACCCAGTTGTAGGTGGGCCTTGCTATCAACTTTATACAAAATCCTTCTATGAAAGTATTGTCAAGCCCAAGCTCAGTGACAATGGCATTTTTGTGACTCAGGCTGGAGTTGCTGGTATCTTGAGTCACAAGGAGGTCTTCACTTCAATATATAACACACTCAAACAAGTTTTTAAATATGTGGTGCCATACACAGCTCACGTACCATCTTATGCTGATACTGTTGGGTGGGTTATGGCTTCAGACCAACCACTGAACATTGGAGCAGAGGAAATGGACAAAAGAATTGAAGCAAGAATCAATGTGGAATTGCTCTATCTAACTGGTGAATGGTTTCAGTCAGCCATCACCATGAATAAGACTCTTTCACAATCGCTTCAGAATGAAACTCATGTGTACACCGAAGAAAGTGCTAGATTCGTCCATGGACATGGTTTGGCTTATCGTCCTTGA 1005 0.4169 MGNVFQKLGHDETEQHNLANDDQKQNNDASWYEESLSDDLKWSFALNSVLHRGTSKYQEFALLDSKRFGKVLVIDGMLQSAEVDEFIYHECLIHPPLLSHPNPKKVFIMGGGEGSSAREILKHKSIESVTMCDIDQDVVDFCRKYLTENKEAFANEKFNLIINDAKAELEKSEEKFDIIVGDLADPVVGGPCYQLYTKSFYESIVKPKLSDNGIFVTQAGVAGILSHKEVFTSIYNTLKQVFKYVVPYTAHVPSYADTVGWVMASDQPLNIGAEEMDKRIEARINVELLYLTGEWFQSAITMNKTLSQSLQNETHVYTEESARFVHGHGLAYRP* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g4003 334 PANTHER THERMOSPERMINE SYNTHASE ACAULIS5 2 333 - -
Lja1g4003 334 PANTHER BNAA02G04280D PROTEIN 2 333 - -
Lja1g4003 334 CDD AdoMet_MTases 110 218 - -
Lja1g4003 334 Gene3D Vaccinia Virus protein VP39 82 333 IPR029063 -
Lja1g4003 334 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 30 310 IPR029063 -
Lja1g4003 334 Pfam Spermine/spermidine synthase domain 85 259 - -
Lja1g4003 334 Gene3D Spermidine synthase, tetramerisation domain 12 81 IPR037163 -
Lja1g4003 334 Coils Coil 155 175 - -
Lja1g4003 334 Hamap Polyamine aminopropyltransferase [speE]. 30 311 IPR001045 GO:0003824
Lja1g4003 334 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 29 266 IPR030374 -
Lja1g4003 334 Pfam Spermidine synthase tetramerisation domain 31 82 IPR035246 -
Lja1g4003 334 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g4003 Lja-Chr1 50750487 50754166 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g4003 K18787 - gmx:100784972 511.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g4003 1 50750487 50754166 Lja1g4003 1 50750487 50754166 ECH