Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3993 ATGGATACTAAAAAAGTATATTGGGCCATCATTGTAGCATGGCTTACTTTGTTTGAAGGAAACATGATGCTTGTTAATGGTGATTTAAATTATAAGGAGGCTCTTACCAAATCCCTTATCTACCTTGAGGCACAAAGATCAGGGAAACTCCCTTCCAATAACAGGGTTCCTTGGAGAGGAGATTCAGCACTTGATGATGGAAAACTCGCCAATGTGGACCTCGTTGGAGGATACTATGATGCAGGGGATAATGTCAAGTATGGGCTTCCCATGGCTTTTACTGTCACCACCCTTGCATGGGGTGCCATTTTTTACAAGTCAGAATTTGAAGCTGCAAATGAATTGGGAAATGTCCGCGATGCCATTAAATGGGGTACGGATTATTTTCTGAAATGTGCTTCTCGAAAGAAAAGATTATACGTGCAGGTAGGGGACCCTGTAGAGGATCACAATTGTTGGGCACCACCAGAAATTATGAAGACAAAGAGAACAGTATTGCAGATTGATAGTGAGACTCCCGGCACTGAGATTGCAGCTGAAACTTCTGCGACAATGGCGGCTTCTTCCATTGTTTTTAGGTCTGTCGATCGTATATATGCTCGCCGTCTCCTCAACAAAGCTAAACTGCTTTTCCACCTGGCAAAATCGCATAAAGGAACCTATGATGGAGAGTGTCCCTTTTACTGCTCCTATTCCGGTTACAATGATGAACTGATGTGGGCAGCAACATGGTTATACTATGCTACAAGGAAGCCTATGTACATGAAGTATATACAAGAAGAATCCATAAGTGCTAGTGTTGCAGAATTCAGTTGGGACCTTAAATATGCAGGAGCTCAAATCCTTCTTACTAAGTTATATTTTGAAGGTCAAAAGGATTTGGAAACCTTCAAAAACCATGGTGAAAGTTTCATATGTTCAGTGCTTCCTGAGAGTCCCTACTATGGAATTAAATTGTCTCCTGGTGGCTTCATTCATTTGAGAGATGGAGCCAACACACAATACGCCACCGGCACAGCTTTCTTGTTAACTGTTTATGGTGATTTGCTTGCCAACCACAATCAGAAAGTCACTTGTGGAGGCAAACAGTTTAGCTCGTCCCATCTCCTCAATTTTGCAAAGAAACAGATGGATTACATACTAGGGAAGAACCCTGAAGGGAGATCGTACATGGTTGGATTTGGGAAGAACCCACCAACGCAAGCTCACCATAGAGGTGCATCGGTGCCAAAGTTGTCGGAGAACGATGAGTTCAGTTGTCCGATGAGCTTTGCGAAGTGGTTTTCAAAAGATGCACCGAACCCGCATGAGCTCACCGGAGCCATTGTGGGTGGACCTGACATCTCCGATAAGTTCAATGATAAGAGATGGGATTCCCCCAACACTGAGTCCTGCACGTATGTCAATTCTCTTGCAGCTGGAGCTCTAGCAAAGCTTGCAGCTATGAGTTGA 1452 0.4373 MDTKKVYWAIIVAWLTLFEGNMMLVNGDLNYKEALTKSLIYLEAQRSGKLPSNNRVPWRGDSALDDGKLANVDLVGGYYDAGDNVKYGLPMAFTVTTLAWGAIFYKSEFEAANELGNVRDAIKWGTDYFLKCASRKKRLYVQVGDPVEDHNCWAPPEIMKTKRTVLQIDSETPGTEIAAETSATMAASSIVFRSVDRIYARRLLNKAKLLFHLAKSHKGTYDGECPFYCSYSGYNDELMWAATWLYYATRKPMYMKYIQEESISASVAEFSWDLKYAGAQILLTKLYFEGQKDLETFKNHGESFICSVLPESPYYGIKLSPGGFIHLRDGANTQYATGTAFLLTVYGDLLANHNQKVTCGGKQFSSSHLLNFAKKQMDYILGKNPEGRSYMVGFGKNPPTQAHHRGASVPKLSENDEFSCPMSFAKWFSKDAPNPHELTGAIVGGPDISDKFNDKRWDSPNTESCTYVNSLAAGALAKLAAMS* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3993 483 PANTHER ENDO-1,4-BETA-GLUCANASE 6 480 - -
Lja1g3993 483 PANTHER ENDOGLUCANASE 16-RELATED 6 480 - -
Lja1g3993 483 Pfam Glycosyl hydrolase family 9 31 476 IPR001701 GO:0004553|GO:0005975
Lja1g3993 483 SUPERFAMILY Six-hairpin glycosidases 28 481 IPR008928 GO:0005975
Lja1g3993 483 Gene3D - 26 483 IPR012341 GO:0005975
Lja1g3993 483 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 379 405 IPR018221 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3993 Lja-Chr1 50689843 50692481 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3993 21 481 Glycoside Hydrolase AT3G43860 71.861 0.0 691
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3993 K01179 - gmx:100811509 827.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3993 1 50689843 50692481 Lja1g3993 1 50689843 50692481 ECH