Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3989 ATGAATGTGTCCAAGAAAGGATTCCAAATGGATGCAAAGCTATTCAGCCCAAACAAGGCAACTAGTCTGAATCCAAATGCAGCAGAGTTTATTCCTTTTGCCCTCAGATCACCATCATCTGGAACTACCAGCTCGGCAGATGCAACAGCAAAGCTTACTACTTTTGGAGCTCATGGGAAATCAGTTTTAGGCAGATCAGAATCATCCAATTCAAATAACTCTGATGATGAGGTGCACCAGTACTGGCGATGTCAGCTCCCTGATGATATAACCCCTGATTTTGAGGTCATGGGAGAAGATGAGTCTCAAGGTGTTAATGACCTTTCTTTGATAGGTTTGTCCATACATGATGACAATGAAACCTCAACGTTTCCTTCTTCAATAGGAAATCGATATAAAATAAATGAGCAGGAGGAATTATCTCAACAGCATTTTAATGGCAACAACTTTGCTGATAAATTCAAGCTCTCCAATTCAAGCTACAGTGAGGACCCGTCTTCTGCCAGCTTTTTGAACACTTTGGCAAAGCCTTGGGATAGGCCAATTGGGAGTGTCAACCAGCATATTAGCAGTGGTCTAGAGGGGCTTAATTCTGATGACAACTCTAGACATGGATTCTTAGATGATGTTTTGGCTGAGAATGCAATTGTGGATGACACTAATTTGAATCCTTTGGAATTTCTAGCTTCTCTGTTTCCTGGTTTTGCTGCAGAAAGTCTTGCAGAAGTTTACTTTGCCAATGGATGCAATCTGCATTTGACCAGTGAGATGCTCACTCAGCTTCAAGATGATGGCAGTTTCAATCAGAATCCGAATTCCAAGACTCTTTCAGCTCCCAATCTCAGTGCAATGGACTTCCCTGCACTTGCTTCATCAGATGGCCAGACTGCTTCTACAAAATATGGCGTAGATAATGTCTATCGAAGTGGAAATCCTTACCGATCATCTGACAATGACATGTTGTTTTTCAAATCAAGGTCTTCAGTTCCATCTAGAGGTGCTATTGACTTTGCTGCAGCTTCTAGGAAGTTGGCTTCTCAGGATTCTGGTGTTTGGAAGTATGACAGAAATGGCTTTGGTGATACTGCTATTGGCTCGACTAGGAGTTCAAATGTTCTGGCTAGTGGCTTCACTAGTGGACAGGGGAGAGTCAACTCTGGCGATCGGTTACAGAAGCGTGGGTCAGCTCGGGAAGCTGCTGTTTGGTTGGAAACTGGTGATTTAGTTGCTAATATGCATTCAGAGCTACGGGAAGAGGCTTGTGATCATGCACGCTTACGCAATGCATATTTTGAACAGGCACAACAAGCCTATCTTATTGGCAATAAAGCCCTAGCGAAAGAATTAAGTGTTAAAGGGCAACTGCATGACATGCATATGGAAGCAGCTCATGGAAAAGCTCAGGAATCTATTTACCACCAGAGAAATCCAGTTGCTCCAGAGATGCGGGGCAATGGAAGGGGGCATGAGAGGATAATAGACCTACATGGGTTGCACGCTAGTGAAGCCATTCATCTGCTGAAACATGAATTGAGTGTGCTAAAAAGCACCGCCATGGCTGCTGGGCAGCGTTTGCAGGCTTACATTTGCGTAGATACAGATCATCATACCTGGGCTTCCCACACTCCTGCTAAACTTCCATTAATTGTACAGCGTTTTCTGCTTGAAGAGGGCCTTGAGTTCACGGTACCTCAGTCAGGCCTACTTTGTGTTGTGATATAA 1722 0.4384 MNVSKKGFQMDAKLFSPNKATSLNPNAAEFIPFALRSPSSGTTSSADATAKLTTFGAHGKSVLGRSESSNSNNSDDEVHQYWRCQLPDDITPDFEVMGEDESQGVNDLSLIGLSIHDDNETSTFPSSIGNRYKINEQEELSQQHFNGNNFADKFKLSNSSYSEDPSSASFLNTLAKPWDRPIGSVNQHISSGLEGLNSDDNSRHGFLDDVLAENAIVDDTNLNPLEFLASLFPGFAAESLAEVYFANGCNLHLTSEMLTQLQDDGSFNQNPNSKTLSAPNLSAMDFPALASSDGQTASTKYGVDNVYRSGNPYRSSDNDMLFFKSRSSVPSRGAIDFAAASRKLASQDSGVWKYDRNGFGDTAIGSTRSSNVLASGFTSGQGRVNSGDRLQKRGSAREAAVWLETGDLVANMHSELREEACDHARLRNAYFEQAQQAYLIGNKALAKELSVKGQLHDMHMEAAHGKAQESIYHQRNPVAPEMRGNGRGHERIIDLHGLHASEAIHLLKHELSVLKSTAMAAGQRLQAYICVDTDHHTWASHTPAKLPLIVQRFLLEEGLEFTVPQSGLLCVVI* 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3989 573 CDD CUE_CID7_like 222 262 IPR041806 -
Lja1g3989 573 SMART DUF1771_2 412 477 IPR013899 -
Lja1g3989 573 SMART SMR_2 490 573 IPR002625 -
Lja1g3989 573 SUPERFAMILY SMR domain-like 491 572 IPR036063 -
Lja1g3989 573 Pfam Domain of unknown function (DUF1771) 415 476 IPR013899 -
Lja1g3989 573 Gene3D - 460 573 IPR036063 -
Lja1g3989 573 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 7 1 573 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3989 Lja-Chr1 50648035 50652254 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3989 - - lja:Lj1g3v1788400.1 967.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3989 1 50648035 50652254 Lja1g3989 1 50648035 50652254 ECH