Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3984 ATGGAGGCGGTTGCGGCGGAGGACGGGTGGTGCGTGGTCACCGGAGGTCGAGGTTTCGCGGCGAGGCATTTGGTTGAGATGCTAATCCGGCACAACATGTACTGCGTTCGCGTCGCCGATTTGGGACCCACCATTGAGCTCGAACCCGGTGAGCAATTGGGGGTTCTCGGTGAAGCTCTGCACTCTGGTCGTGCTGAATATATCTCCGTCGATCTTCGCGACAAGGCTCAAGTCTTGAAAGCTTTTGAAGGAGCTGAAGTTGTGTTCCACATGGCTGCTCCGAACTCTTCCATTAACAGCTACCAGCTGCATCACTCCGTCAATGTACAAGGAACACAGAATGTGATCGATGCTTGCGTTGAGCAAAAAGTGAAGCGATTAATCTACACCAGCTCTCCCAGTGTTGTCTTTGATGGAGTTCATGGAATTCATAATGGAAGCGAATCATTGCCATATCCACCTTCGCATAATGATCACTATTCAGCTACTAAAGCTGAGGGTGAGGCATTAGTTATCAAGTCTAACGGTACCAGTGGGCTCCTAACGTGCTGCATACGCCCTAGCAGCATATTTGGGCCGGGTGATAAACTGTTGGTGCCTTCATTAGTTGATGCTGCAAGGGCAGGGAAATCCAAGTTCATTATTGGGGATGGAAATAACCTTTATGATTTCACTTATGTTGAAAATGTGGCTCATGCCCATGTATGTGCTGAACGAGCTCTAGCTTCAGATGCAACAGTTTCAGAAAAAGCTGCTGGAGAGGCATATTTCATTACAAATATGGAATCTATGAAGTTTTGGGAGTTTATGTCACTGATTTTGGAAGGTCTTGGATATGAAAGGCCAAGAATAAAGATCCCTGCCTTTGTTATCATGCCTATTGCACATTTGGTAGAGCGGATATATAAGCTGCTCGCCCCATATGGGATGAAGGTTCCTCAGTTGACCCCTTCAAGAGTAAGACTACTGTCTTGCACCAGAACTTTTGATTGCTCAAAAGCAAAGGATCGCCTTGGCTACGAACCCATCGTAACACTACAGGAGGGTCTGCGGAGGACAATTGAATCATACCCACACTTGAGAGCTGAAAATATACCTAAAACTAAAAGAGAAGGCCCCTCAAAAGCTTCCATATATCTTGGAAGTGGAAGAGTTGCTGACACATTGCTTTGGAAGGATAAAAAGCTTACTTTCACCACATTGTTAGTCTTGATTGCAATTTACATCAACTTCATTGCATCTCAGAATACCATCGTTACCGCCCTTGCAAAGCTTCTATTGTTCTCATCTATATTTTTATTCATCCATGGCTTTGTACCTGCAAAAATATTGGGATATACTGTTGAGAAAATGCCCACATCCTGGTTTCACTTATCCGAAGATATGTCACATCAAATTGCTCTCTCAGTGGCATCATCTTGGAATCTTGCTGTGGATGGTTTGAAATCACTTGCACAAGGGAATGATTGGATGCTGTTCTTTAAGGTTGTTTTATCTCTGCTCATTCTTAGCTTCCTTGGAGCCTTTTCACTTCAGAACTTATATACTATAGGACTTACCTTTGCGTTTATAGCTTTCTACGTTTATGAAAAGAAGGAGGAAGAGATTGATGGCATATTTCTAAAAATGCATTCTTTTGGATGCAAATTGATATCTGATCTCAACAGGAAGTTTCTATCTTCAAAGAAAGTTGATTGA 1698 0.4346 MEAVAAEDGWCVVTGGRGFAARHLVEMLIRHNMYCVRVADLGPTIELEPGEQLGVLGEALHSGRAEYISVDLRDKAQVLKAFEGAEVVFHMAAPNSSINSYQLHHSVNVQGTQNVIDACVEQKVKRLIYTSSPSVVFDGVHGIHNGSESLPYPPSHNDHYSATKAEGEALVIKSNGTSGLLTCCIRPSSIFGPGDKLLVPSLVDAARAGKSKFIIGDGNNLYDFTYVENVAHAHVCAERALASDATVSEKAAGEAYFITNMESMKFWEFMSLILEGLGYERPRIKIPAFVIMPIAHLVERIYKLLAPYGMKVPQLTPSRVRLLSCTRTFDCSKAKDRLGYEPIVTLQEGLRRTIESYPHLRAENIPKTKREGPSKASIYLGSGRVADTLLWKDKKLTFTTLLVLIAIYINFIASQNTIVTALAKLLLFSSIFLFIHGFVPAKILGYTVEKMPTSWFHLSEDMSHQIALSVASSWNLAVDGLKSLAQGNDWMLFFKVVLSLLILSFLGAFSLQNLYTIGLTFAFIAFYVYEKKEEEIDGIFLKMHSFGCKLISDLNRKFLSSKKVD* 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3984 565 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 6 406 - -
Lja1g3984 565 Pfam Reticulon 385 540 IPR003388 -
Lja1g3984 565 Pfam 3-beta hydroxysteroid dehydrogenase/isomerase family 12 286 IPR002225 GO:0003854|GO:0006694|GO:0016616
Lja1g3984 565 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 11 357 IPR036291 -
Lja1g3984 565 ProSiteProfiles Reticulon domain profile. 385 537 IPR003388 -
Lja1g3984 565 PANTHER 3BETA-HYDROXYSTEROID-DEHYDROGENASE/DECARBOXYLASE ISOFORM 1 6 406 - -
Lja1g3984 565 Gene3D - 2 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3984 Lja-Chr1 50563459 50569688 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3984 12 374 Lipid Metabolism Gene Families AT2G33630 31.234 5.31e-47 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3984 K23558 - gmx:100799363 950.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3984 1 50563459 50569688 Lja1g3984 1 50563459 50569688 ECH