Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3983 ATGAGCTTCTTCTTCTCCGCAACCGCAACCACGATGAGTTTGGATATGGATCTTGCTCTGTTCGACGACGATGAATTCGAGATTCCTCTTACGCAGACAGCAACCATTCACCGCCCATTGAAGAAACACAAACTCGAAACGACGGCGTTTGGTGGTAGTGGCAAGGAGAATGTTCCTCCAAACGCGTCCTCTTCTACTATTCACGACGACGGTTACGAAATTGAGAATTGCAGCTTGGATTTCATTCCTTCTACTATAGATTCAGTTGGAACCGCTCTAACTGATTCTTCTTCTTCTTCTTCTTCTGCATCTGTATCTGCGTTTGTGATTTCGTCTCCGGTGAAGGTGAAAATGAAGGGGACTGCGTATTTTGGCAACTCGATTGAGTCGAAGCTGGTGGTTTCGAGAGCGAACGCGATTAATAATGCAGAAGCTGGTTCGGAGCTGAATTTGAGCGATGAGTTAGATGGCTCCGTTCGGTGTCCTCTCTGTGAGGTTGATATTTCCAACTTGACTGAGGAACAACGGCATCTTCACACCAATGATTGTCTTGATAGAGGAGATGATGTTGCTGTTCGTGATGACAACGTGGATGCTCAGTTTGCGCCGAAAGTCTCTCGTGTAGTTGATTGGCTGCGTGATCTCGGTTTAGGGAAATATGAAGACGTTTTTGTTAGGGAAGAGGTTGATTGGGACACCTTGCAGTGGCTCACAGAGGAGGATCTCTTGAGCATGGGTGTCACTGCACTTGGCCCTAGAAAAAAGATTGTGCATGCCCTGTGTGAATTTAGAAAAGGAATTGCTGCTTCAAATGAAAAACCTGAGGATGCTCTGGCAGAGCCTAGAAGGAATAGAAACCAGAATGTCAAAATGCAGCCTCACAGACCTGAAAGGAAAGTTGATGGCACTAGTAAACCAGCTGCAAACAAAAAAATTACTGAATATTTTCCAGGATTTGCTACTAATGGGAAGAAAGTTTCCACCGCTCCTGAAGAGCAACAAGAAATGAAAAGCAGTGGCTCCGTTTCTGGGCGTAACCACAAAGGAAAAAATTCGTCAACAAATAGAAAGCTTCGTGATGTTCCCAAATGGTGTAGCATAGAAGGAACACCTTTCCGAGTGGATGCTTTCAAGTATCTCAGAGGAGATTGTTCTCACTGGTTTCTCACACATTTCCACTTGGACCATTATCAAGGTCTCACGAAGTCGTTCAATCATGGAAAGATATATTGCTCTTCTATTACAGCTAGACTTGTAAATATGAACATTGGGATTCCATATGATAAGTTACATATTTTGCCTCTGAACCAAAAGGTTGAAATAGCTGGTATTGATGTGACTTGCTTGGATGCCAACCACTGTCCAGGTTCCATAATCATACTCTTTCAACCTCCGAATGGTAAGGCCGTACTCCACACGGGTGATTTTCGGTTTAGTGATGAGTTAGCAATAAATCCTGTCCTGAGGATGTGTCCTGTTCATACTTTAATTCTTGATACAACATACTGCAACCCACAGTATGACTTTCCAAAACAAGAGGCAGTTATACAATTTGTTATTGATGCCATTCAAGCAGAAGCTTTTAATCCCGGGACTCTTTTCCTGATTGGCAGTTATACAATTGGAAAAGAAAGGCTATTCCTTGAGGTTGCTCGTTCGCTACGAAGAAAGGTTTACGTGAATGCAGCAAAGTTACGTCTTTTAAAATGTTTAGAATTTGAGGAGGAGGATATGCAGTGGTTTACTTTAAATGAACACGAAAGCAACATTCATGTGGCCCCTATGTGGACACTTGCAAGCCTCAAAAGATTGAAACATGTATCAAGTCAATATGCAAGTCGGTTCAGTCTTATAGTTGCTTTCTCTCCTACCGGTTGGACATTTGGCAAAGGTAAAAAGAAATCTCCTGGAAGAAGGTGGCAGAACGGTACTATTATAAGGTATGAGGTGCCTTACAGTGAGCATTGCAGCTTTACAGAACTCAAAGATTTTGTAAAACATATATCTCCTGCTAACATTATACCAAGCGTGAATAATGATGGACCAGAATCTGCCAATGCAATGATTTCTCTCATGTCATCTTGA 2085 0.4254 MSFFFSATATTMSLDMDLALFDDDEFEIPLTQTATIHRPLKKHKLETTAFGGSGKENVPPNASSSTIHDDGYEIENCSLDFIPSTIDSVGTALTDSSSSSSSASVSAFVISSPVKVKMKGTAYFGNSIESKLVVSRANAINNAEAGSELNLSDELDGSVRCPLCEVDISNLTEEQRHLHTNDCLDRGDDVAVRDDNVDAQFAPKVSRVVDWLRDLGLGKYEDVFVREEVDWDTLQWLTEEDLLSMGVTALGPRKKIVHALCEFRKGIAASNEKPEDALAEPRRNRNQNVKMQPHRPERKVDGTSKPAANKKITEYFPGFATNGKKVSTAPEEQQEMKSSGSVSGRNHKGKNSSTNRKLRDVPKWCSIEGTPFRVDAFKYLRGDCSHWFLTHFHLDHYQGLTKSFNHGKIYCSSITARLVNMNIGIPYDKLHILPLNQKVEIAGIDVTCLDANHCPGSIIILFQPPNGKAVLHTGDFRFSDELAINPVLRMCPVHTLILDTTYCNPQYDFPKQEAVIQFVIDAIQAEAFNPGTLFLIGSYTIGKERLFLEVARSLRRKVYVNAAKLRLLKCLEFEEEDMQWFTLNEHESNIHVAPMWTLASLKRLKHVSSQYASRFSLIVAFSPTGWTFGKGKKKSPGRRWQNGTIIRYEVPYSEHCSFTELKDFVKHISPANIIPSVNNDGPESANAMISLMSS* 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3983 694 CDD SAM_superfamily 207 260 - -
Lja1g3983 694 Gene3D - 201 276 IPR013761 -
Lja1g3983 694 Pfam SAM domain (Sterile alpha motif) 204 260 IPR001660 GO:0005515
Lja1g3983 694 Gene3D - 367 677 IPR036866 -
Lja1g3983 694 MobiDBLite consensus disorder prediction 271 307 - -
Lja1g3983 694 MobiDBLite consensus disorder prediction 323 357 - -
Lja1g3983 694 Pfam DNA repair metallo-beta-lactamase 576 680 IPR011084 -
Lja1g3983 694 SUPERFAMILY Metallo-hydrolase/oxidoreductase 371 676 IPR036866 -
Lja1g3983 694 ProSiteProfiles SAM domain profile. 203 266 IPR001660 GO:0005515
Lja1g3983 694 SUPERFAMILY SAM/Pointed domain 204 264 IPR013761 -
Lja1g3983 694 MobiDBLite consensus disorder prediction 326 349 - -
Lja1g3983 694 Gene3D - 508 655 - -
Lja1g3983 694 SMART SAM_4 201 266 IPR001660 GO:0005515
Lja1g3983 694 PANTHER DNA CROSS-LINK REPAIR 1A PROTEIN 159 692 - -
Lja1g3983 694 CDD SNM1A-1C-like_MBL-fold 353 505 - -
Lja1g3983 694 MobiDBLite consensus disorder prediction 290 305 - -
Lja1g3983 694 PANTHER DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED 159 692 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3983 Lja-Chr1 50558773 50563256 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3983 206 260 Glycosyltransferase AT3G07170 49.091 1.09e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3983 K15340 - gmx:100816321 986.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3983 1 50558773 50563256 Lja1g3983 1 50558773 50563256 ECH