Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3980 ATGGCTAGGAATAGTGAACGTGACATGTTCTCAGCGGAGATTGTGAACCGTGGGATTGAGTCTTCAGGACCCAACGCCGGTTCATTGACATTCTCCGTGAGGGTGAGGAGGCGGTTGCCGGATTTTCTTCAATCGGTGAACCTTAAGTATGTGAAGTTGGGTTACCATTACCTAATCAACCATGGCATTTACTTGTTCACCATTCCCCTGCTTCTGGTGGTGTTCAGTGCTGAAGTTGGTAGCCTCAGCAAAGAGGATCTCTGGAAGAAGCTATGGGAAGATGCGAGTTACGACCTCGCCTCCGTCCTTGCTTCCTTTGCTGTCTTTGTTTTCACCTTGTCTGTCTACTTCATGTCCAAGCCACGCCCCATTTACCTCATTGATTTTGCATGCTATCGACCTGAAGATGAACTCAAGGTATCAAGAGAGCAATACATAGAACTAGCAAGCAAATCAGGCAAATTCGACGAAGAAAGCCTAGCATTCCAGAAAAGGATCCTAATGTCCTCCGGCATCGGCGACGAGACTTACATTCCAAAAGCCGTAGTATCCTCCACCACCAACACCGCCACAATGAAAGAAGGCCGAGCAGAAGCCTCCACCGTCATGTTCGGAGCCCTCGACGAGCTTTTCGAGAAAACCGGTATCCGGCCGAAGGACATAGGAATCCTGGTGGTGAACTGCAGCATCTTCAACCCAACGCCGTCGCTTTCAGCGATGATCATAAACCACTACAAGATGAGAGGGAACATTCTGAGCTACAATCTGGGTGGAATGGGGTGCAGTGCGGGGATCATTGGAGTTGACTTGGCGAGGGATATTCTGCAGTCGAACCCGAATAACTATGCGGTGGTTGTGAGCACGGAGATGGTGGGGTTTAACTGGTATCAGGGGAAGGAGAGGTCGATGCTGATTCCGAATTGCTTCTTCCGGATGGGGTGCTCGGCGTTGCTGCTTTCTAACCGGCGGTTTGATTATAACAGGGCGAAGTACAGGCTTGAACACATTGTCAGGACGCATAAGGGTGCTGATGATCGTAGTTTCAGGTGTGTGTACCAAGAGGAAGATGACCAAAAATTCAAGGGACTGAAGATCAGCAAAGACTTGATTGAGATTGGTGGTGATGCTCTCAAAACCAACATCACCACACTAGGACCCTTGGTGCTACCCTTCTCAGAGCAACTTCTCTTCTTTGCAACCCTTGTCTGGAGGCACTTGTTTGGTGGAAAATCTGATGGAAACTCATCACCATCAATGAAAAAACCATACATTCCTAACTACAAACTAGCTTTTGAGCATTTCTGTGTGCATGCCGCAAGCAAGCCTATCCTTGATGAGCTTCAGAGGAACCTGGAACTGAGTGAAAAAAACATGGAGGCTTCAAGAATGACACTGCACCGATTCGGCAACACATCAAGCAGCAGCATTTGGTATGAGCTTGCTTACATGGAGGCTAAAGAGAGAGTGAGAAGAGGAGACCGTGTTTGGCAACTTGCTTTTGGTTCTGGATTCAAGTGCAACAGTGTGGTTTGGCTTTCAATGAAAAGGGTTAACAAGCCTTCTAGGAACAACCCTTGGCTTGACTGCATTAACAGATACCCTGTGTCTCTCAATTGA 1617 0.4799 MARNSERDMFSAEIVNRGIESSGPNAGSLTFSVRVRRRLPDFLQSVNLKYVKLGYHYLINHGIYLFTIPLLLVVFSAEVGSLSKEDLWKKLWEDASYDLASVLASFAVFVFTLSVYFMSKPRPIYLIDFACYRPEDELKVSREQYIELASKSGKFDEESLAFQKRILMSSGIGDETYIPKAVVSSTTNTATMKEGRAEASTVMFGALDELFEKTGIRPKDIGILVVNCSIFNPTPSLSAMIINHYKMRGNILSYNLGGMGCSAGIIGVDLARDILQSNPNNYAVVVSTEMVGFNWYQGKERSMLIPNCFFRMGCSALLLSNRRFDYNRAKYRLEHIVRTHKGADDRSFRCVYQEEDDQKFKGLKISKDLIEIGGDALKTNITTLGPLVLPFSEQLLFFATLVWRHLFGGKSDGNSSPSMKKPYIPNYKLAFEHFCVHAASKPILDELQRNLELSEKNMEASRMTLHRFGNTSSSSIWYELAYMEAKERVRRGDRVWQLAFGSGFKCNSVVWLSMKRVNKPSRNNPWLDCINRYPVSLN* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3980 538 PANTHER 3-KETOACYL-COA SYNTHASE 6 535 IPR012392 GO:0006633|GO:0016020|GO:0016747
Lja1g3980 538 Gene3D - 121 512 IPR016039 GO:0016746
Lja1g3980 538 CDD CHS_like 100 511 - -
Lja1g3980 538 Pfam FAE1/Type III polyketide synthase-like protein 116 405 IPR013601 GO:0006633|GO:0016020|GO:0016747
Lja1g3980 538 Coils Coil 444 464 - -
Lja1g3980 538 SUPERFAMILY Thiolase-like 110 325 IPR016039 GO:0016746
Lja1g3980 538 SUPERFAMILY Thiolase-like 334 511 IPR016039 GO:0016746
Lja1g3980 538 PIRSF Very_long_ch_3-ktacl-CoA_syn 41 538 IPR012392 GO:0006633|GO:0016020|GO:0016747
Lja1g3980 538 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 432 511 IPR013747 -
Lja1g3980 538 PANTHER 3-KETOACYL-COA SYNTHASE 10 6 535 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3980 Lja-Chr1 50519332 50523872 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3980 1 537 Miscellaneous Gene Families AT2G26250 75.090 0.0 882
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3980 K15397 - gmx:100778487 984.171
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3980 1 50519332 50523872 Lja1g3980 1 50519332 50523872 ECH