Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3977 ATGGAATGCATTGGCAGAAGTGTGAGTTTGAAGAGAAAGTCACCAGAAAATGGAGATAATCCACTCTTCAGCAACTTTTCTCTGGATGACCTTAATGAAGATCTGTTTGAAAGGATACTTTCATGGCTGCCAACTTCCACATTCTTCCGCGGTACTTCGGTGTGCAAAAGATGGAAATCAGTTGCTGCTTCTACCAGTTTCAAGCATGCCTGCTCTCAAATTCCTTCAAGGGAACCTTGGTTTCTCATGGTTGCTCCCAACCTCAACCAATCTGTTATCTTTGACATTGCTGAAAGCTCTTGGAAAAGACTCAACCATCCACCTCTTCTGCATGAAGAATCTAACCAAAGTTGCATGCCGGTTGCATCCTCCGGCGGCTTGATTTGCCACAGAAAATTATCAGGAGACTTCATTGTGAGCAATCCTGTGACAGGATCTTGCAGTGAACTCCCTCCACTGCACATTTCATCTCAGAACCAACCTCTCAATGCCATTGTGATGAGAACAGCTTCAAAAGACCAACTCTCCTTCAGAATTGTGTTAGTCTTCGGCGAGCTTCCAAATCTCGTGTTTAAAGTCTACAATTCAAGCTCTGGCTGTTGGGAAAATGAGACTGCACTGAGGAGAAAGGTTGGTGATATTGATAATTCCATGGAATATGATTCAACAGATGAGAATGCTGTGTATTTTCTCAGCAAAGGTGGAATTGTGGTAGCAAGCAGCTTGCAGAGAAGCGCTTCTAAGCAATATTCATCAGTTGTTACCAACAAAGATGGTAATGAGATCGTGTATTATCTTAGCTCCTCAGGGACAGTGGTAGCTTGCAATTTGACAAGAAAGTGCTTCTTTGAGCATCCCAGGTTGTTGCCAGTTTTTAGTGAGTACTCCATTGATGTTGTGGAGTGTAATGGGGAGATGCTGATTGTTTTGTTATCAGAGTTCTTGGAAACTGCTAGTCTTAGGGTGTGGAAATATGATGAGGGTTGGCACCAGATTGCAGCAATGCCAGTGGCTAATTCCCATGAGTGGTTTGGGAAAAAGGCTGATATAAACTGTGTAGGAGCTGGTAACCAGATTTTTGTGTGCTTGAACTCCCCTGAAATATGCACTTATGTTCTGTGTGATTTGGAGACCAACAAGTGGGTTGAATTGCCAAAATGCTGCCTAAATGGTGAAGTCATGGACTTCATGTCTGCTTTTTCATTTGAGCCTAGAATAGAGGCTTCTGTGTGA 1233 0.4307 MECIGRSVSLKRKSPENGDNPLFSNFSLDDLNEDLFERILSWLPTSTFFRGTSVCKRWKSVAASTSFKHACSQIPSREPWFLMVAPNLNQSVIFDIAESSWKRLNHPPLLHEESNQSCMPVASSGGLICHRKLSGDFIVSNPVTGSCSELPPLHISSQNQPLNAIVMRTASKDQLSFRIVLVFGELPNLVFKVYNSSSGCWENETALRRKVGDIDNSMEYDSTDENAVYFLSKGGIVVASSLQRSASKQYSSVVTNKDGNEIVYYLSSSGTVVACNLTRKCFFEHPRLLPVFSEYSIDVVECNGEMLIVLLSEFLETASLRVWKYDEGWHQIAAMPVANSHEWFGKKADINCVGAGNQIFVCLNSPEICTYVLCDLETNKWVELPKCCLNGEVMDFMSAFSFEPRIEASV* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3977 410 PANTHER F-BOX/KELCH-REPEAT PROTEIN 21 410 - -
Lja1g3977 410 SUPERFAMILY Galactose oxidase, central domain 91 387 IPR011043 -
Lja1g3977 410 Pfam F-box-like 35 65 IPR001810 GO:0005515
Lja1g3977 410 SMART fbox_2 31 71 IPR001810 GO:0005515
Lja1g3977 410 ProSiteProfiles F-box domain profile. 25 70 IPR001810 GO:0005515
Lja1g3977 410 SUPERFAMILY F-box domain 20 83 IPR036047 GO:0005515
Lja1g3977 410 Gene3D - 22 69 - -
Lja1g3977 410 PANTHER F-BOX PROTEIN FAMILY, ATFBX13-LIKE PROTEIN 21 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3977 Lja-Chr1 50479849 50482222 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3977 - - gmx:100786481 700.664