Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3971 ATGAATGACCCATTGAAGGCAGCTTCACAAATGGGAGATATAGACTTTCTCTACAAACTGATTCAGATGGAACCATTTCTGTTGGAGCACACTGATTTGATCCCATTTGTTGATACTCCTCTGCATATTGCTGCTGCTGCTGGGCATGCCAGTTTTGCCACTGAGATTATGAGACTCAAACCTTCCTTTGCTTGGAAGTTGAATCCCTATGGTCTCAGCCCCATGCACCTTGCTTTGCAAAACAAACATTACAGAATGGTTCAACGCTTCGTCTACATTGACAAGGACCTCGTTCGAGTGAAAGGGAGGGAAGGCCTTACCCCTTTACATGTTGTAACTCAAGCTGGAAAAACTGATCTCATAGTTAAATTCTTATCAGCATGTCCAGGTTCCATTGAAGATGTCACTGTTCAGAGTGAGACTGCTCTTCATATTGCTGTGAGATATCAACAGTTTCAGGCACTGGAGGTCTTGCTCGGCTGGCTTCAGAGGACCTGCCATAAACATGCTCCCAAACAGGAAAAACGGGTTCTCAACTGGGAGGATGAGGCAGGAAACACTATTCTCCACATTTCAGTTCTCCAAGGATTCCCACAGGCAGTTAGATTGTTGATAGATACCAAGATAGACTTAAATGTTAAGAATTTGGAGGGTTTAACAGCATTGGACATAGTGGAGATGCATCAGACACACCCTTACAGTGCAGAGATCAGGGACATGATAGTTACAGCAGGAGCTTTACATGGTTTTTCACTTTCTGCTGCAGCACCCTGTGAACAAGAGCTAAGATCCAAAATCACATTCAATGAGAGAGTAGCAATTTGCGCTACTCGCCTCAGAAGGAGAATATCAAACGACACGCGCAATGCTTTGTTGGTTGTAGCTATTCTTTTCGCGACAAGCACATATGATGCAGCACTTAACCCTCCTGGTGGCGTTTACCAGTCTGATAGTAGTAGTACTGCTTCATATAAGAGGACCGGTCTCAGGCCTGCTAGTAATAGTCATGGTGATAGAGTGCAAGAAAATCTTGGGAAAGTGGTGATGAAGATTCAAACATTCTTTTGGTTCTGGTCATTCAATACATGTTCCTTCTATCTTTCAATTTTGATGATATGTTTGCTAATGCCTAGAGGGCGCATCAGTGTTATAGTGACTTCTCCACTCATTCTATTTTCTGGTTGCTATGTCTTCTCCATGCTGGTCATATCACCTAGTGTTAAGTGTACCATTGCCACAGTTGCTCTGCCATGCATGCTTATGTTATTCTACTGTTGGGGAACTTCAGTGTACATTAGATTAGCCAAAAAGCTTAGAAATTATGGTAATCAACATGAAGACAAGTCCAGGTTTTCAGGGGGAAACAGATGGTAA 1374 0.4294 MNDPLKAASQMGDIDFLYKLIQMEPFLLEHTDLIPFVDTPLHIAAAAGHASFATEIMRLKPSFAWKLNPYGLSPMHLALQNKHYRMVQRFVYIDKDLVRVKGREGLTPLHVVTQAGKTDLIVKFLSACPGSIEDVTVQSETALHIAVRYQQFQALEVLLGWLQRTCHKHAPKQEKRVLNWEDEAGNTILHISVLQGFPQAVRLLIDTKIDLNVKNLEGLTALDIVEMHQTHPYSAEIRDMIVTAGALHGFSLSAAAPCEQELRSKITFNERVAICATRLRRRISNDTRNALLVVAILFATSTYDAALNPPGGVYQSDSSSTASYKRTGLRPASNSHGDRVQENLGKVVMKIQTFFWFWSFNTCSFYLSILMICLLMPRGRISVIVTSPLILFSGCYVFSMLVISPSVKCTIATVALPCMLMLFYCWGTSVYIRLAKKLRNYGNQHEDKSRFSGGNRW* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3971 457 ProSiteProfiles Ankyrin repeat profile. 184 216 IPR002110 GO:0005515
Lja1g3971 457 ProSiteProfiles Ankyrin repeat profile. 104 125 IPR002110 GO:0005515
Lja1g3971 457 Pfam Domain of unknown function 285 400 IPR026961 -
Lja1g3971 457 ProSiteProfiles Ankyrin repeat region circular profile. 104 125 - -
Lja1g3971 457 Gene3D - 1 255 IPR036770 -
Lja1g3971 457 Pfam Ankyrin repeats (many copies) 178 224 IPR002110 GO:0005515
Lja1g3971 457 SUPERFAMILY Ankyrin repeat 4 229 IPR036770 -
Lja1g3971 457 PANTHER HOMEOBOX PROTEIN WARIAI 10 422 - -
Lja1g3971 457 ProSiteProfiles Ankyrin repeat region circular profile. 184 215 - -
Lja1g3971 457 PANTHER ANKYRIN REPEAT PROTEIN 10 422 - -
Lja1g3971 457 SMART ANK_2a 36 65 IPR002110 GO:0005515
Lja1g3971 457 SMART ANK_2a 138 168 IPR002110 GO:0005515
Lja1g3971 457 SMART ANK_2a 70 99 IPR002110 GO:0005515
Lja1g3971 457 SMART ANK_2a 104 134 IPR002110 GO:0005515
Lja1g3971 457 SMART ANK_2a 184 213 IPR002110 GO:0005515
Lja1g3971 457 Pfam Ankyrin repeats (3 copies) 101 159 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3971 Lja-Chr1 50379736 50381894 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3971 1 328 Miscellaneous Gene Families AT4G10720 46.505 1.07e-98 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3971 - - gmx:100790227 647.506