Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3958 ATGAAGATAGCAGTGGAGGGTTGTATGCATGGCGATCTAGACAAGGTATACAAAACCCTCCAACACATGGAGAAAACCCAGAACACCAAAATCGACCTCCTCCTCTGTTGCGGCGATTTTCAAGCCGTGAGGAACGAGAATGATTTGAAGTCCCTCAACGTGCTTCCCAAATACCGCGAAATGAAATCCTTCTGGAAGTACTACTCTGGGTTAGAGGTTGCACCTTATCCCACCATCTTCATCGGTGGTAACCACGAAGCTTCCAATTACCTCTGGGAACTGTATTATGGAGGATGGGTTGCGCCTAATATCTACTACTTGGGCGCTGCTGGGGTGGTTAGGTTTGGGAATATCCGAATCGGTGGATTGTCTGGAATTTTCAATGGTCGTCACTATAATTTAGGACACTTTGAGAGGCCTCCATATGATCAGAGCACCATCAGGTCTGTGTATCATGTTCGTGAATATGACGTTCAAAAACTTAACCAAGTTCAGGAACCCATTGACATTTTTCTCTCACATGATTGGCCGGTGAGAATCACTGATTATGGGGATTGGGAGGAGCTTGTTCGGAAGAAGAGTGATTTTAAGCAGGAGATAGAAGAAAAAAGACTTGGGAGCAAACCTGCTGCCCTACTTCTAGAAAGATTGAAACCGCATTATTGGTTTTCAGCTCACTTACACTGCAAGTTTTCCGCTCTTGTTCAACACGGGGAAGGAGGTCCACTGACAAAATTCCTAGCACTTGATAAATGTATTCCAGGGCGTGATTTCTTACAGATCGTGGAAATTGAATCGGAGCCAGGGCCTTATGAGATTCTGTATGATGAAGAATGGTTAGCGATAACACGGAGGTTCAACTCTATTTTTCCTCTGACCACCAAAGGTGCAGATTTTAGAGCTGTAAATCTTGAGATGGAAGATTGTCGTGAATGGGTTAGAAGCAGGCTACGAGAGAGGGGGTGCAAACCTTTTGAATTCGTTAAAACAGCTCCATGCTATGATGATCCTTCTCAATCCAGTTCTGATGGTGCTTTTACCGCGAGTCCTCGGAATCCTCAGACAGAATCTCTTCTGCAGCTTCTAGAGCTTCCTTATCTTCTTGATAGGAATCCTGAAGAAAAGAACTTGTCACCTTATCCTTCTCCTTCAATTCAAAGAGGTCCCGTTGCTTATGATAACAAGGACATTCCCATTGATGATGTGGATGATGATGATGAAGATGTGGATTGCCATTAA 1239 0.4415 MKIAVEGCMHGDLDKVYKTLQHMEKTQNTKIDLLLCCGDFQAVRNENDLKSLNVLPKYREMKSFWKYYSGLEVAPYPTIFIGGNHEASNYLWELYYGGWVAPNIYYLGAAGVVRFGNIRIGGLSGIFNGRHYNLGHFERPPYDQSTIRSVYHVREYDVQKLNQVQEPIDIFLSHDWPVRITDYGDWEELVRKKSDFKQEIEEKRLGSKPAALLLERLKPHYWFSAHLHCKFSALVQHGEGGPLTKFLALDKCIPGRDFLQIVEIESEPGPYEILYDEEWLAITRRFNSIFPLTTKGADFRAVNLEMEDCREWVRSRLRERGCKPFEFVKTAPCYDDPSQSSSDGAFTASPRNPQTESLLQLLELPYLLDRNPEEKNLSPYPSPSIQRGPVAYDNKDIPIDDVDDDDEDVDCH* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3958 412 SMART DBR1_2 235 368 IPR007708 GO:0006397|GO:0016788
Lja1g3958 412 SUPERFAMILY Metallo-dependent phosphatases 1 245 IPR029052 -
Lja1g3958 412 CDD MPP_Dbr1_N 3 259 IPR041816 -
Lja1g3958 412 MobiDBLite consensus disorder prediction 372 412 - -
Lja1g3958 412 Pfam Calcineurin-like phosphoesterase 1 229 IPR004843 GO:0016787
Lja1g3958 412 MobiDBLite consensus disorder prediction 398 412 - -
Lja1g3958 412 Gene3D - 8 244 IPR029052 -
Lja1g3958 412 Pfam Lariat debranching enzyme, C-terminal domain 244 365 IPR007708 GO:0006397|GO:0016788
Lja1g3958 412 PANTHER RNA LARIAT DEBRANCHING ENZYME 1 383 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3958 K18328 - gmx:100812726 702.975