Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g3941 ATGGCGTTTTTGAGATCTCTCGCTTTCTCTGCAGTTCTTCTTCTTCTCATTCATGGCGCTCACTGCTTCTACCTCCCCGGTGTCGCTCCACAGGACTTCATAAAGGGAGATCAATTGCAAGTGAAAGTAAACAAATTATCATCAATAAAGACCCAGCTTCCGTACTCATATTATTCACTTCCTTATTGTGCCCCCAAAAAAATACAGGATAGTGCTGAAAATCTTGGGGAAGTGCTTCGTGGGGACCGCATTGAAAATTCTCGTTATGTGTTTAAAATGCGCGAGCCAGAAATGTGCAATATTGTGTGTAAGATTAAGCTTGATGCTAAAACTGCAAAAGCGTTCAAAGAGAAGATCAATGATGAGTATCGGGTGAACATGATCCTAGATAACCTTCCTCTAGTTGTTCCCATAAAACGGAATGATCAGGATTCTACTGTTTATCAGCTTGGTTTCCATGTTGGACTCAAAGGCCAGTATAGTGGGAGCAAGGAGGAAAAGTTTTTTATTCACAACCATTTGGCATTTACTGTCAAGTATCATAGAGATGTGCAAACTGAATCTGCTAGAATCGTGGGTTTTGAAGTCAAGCCGTTCAGTGTCAAACACGAATATGAACAAGGTCAATGGTTAGAAAAAAAGACTCGTTTGACAACCTGTGACCCTCATGCTAAACACACCGTTATCAACTCTAACACTCCTCAAGAGGTTGAAGAGAACAAGGAAATTATCTTCACATATGATGTTGATTTCCAGGAGAGTGATGTGAAGTGGGCTTCAAGATGGGATGCATATTTGCTCATGAATGATGACCAAATCCACTGGTTCTCAATTGTTAACTCCTTAATGATTGTTCTCTTCCTTTCGGGCATGGTGGCAATGATTATGCTGCGGACCCTGTACCGTGACATTGCAAAATATAATGAGCTTGAAACCCAGGAAGAAGCCCAAGAAGAGACTGGTTGGAAACTTGTCCATGGGGATGTCTTTAGGCCGCCTAGCAACTCAGATTTGCTGTGTGTTTATGTTGGGACTGGCGTTCAGTTCTTTTGGATGGTACTGGTAACCATGATGTTTGCAATCCTCGGGTTCCTTTCTCCTTCAAACCGAGGTGGGTTAATGACAGCCATGCTCTTGCTTTGGGTGTTCATGGGACTTTTCGCTGGTTACTCCTCAGCTCGCCTGTACAAAATGTTCAAAGGATCGGACTGGAAAAAGATTGCCCTCAGGACTGCAACCATGTTCCCTGCAACTGTCTCTCTCATCTTCTTTATATTAAATGCTCTCATATGGGGCCAAAAATCATCTGGAGCTGTGCCATTTGGTACTATGTTTGCTTTGGTCTTTTTATGGTTTGGGATCTCAGTCCCACTTGTTTTTGTGGGTGGCTATGTTGGATTTAAGAAGCCTGCGATTGAGAGTCCTGTGAAGACAAACAAAATCCCAAGGCAGATACCTGAGCAGGCCTGGTACATGAACCCAGTCTTCTCAGTTTTGATTGGGGGAATACTCCCATTCGGAGCTGTTTTCATTGAGCTTTTCTTCATCCTTACCTCAATCTGGTTAAATCAGTTTTACTACATCTTTGGGTTCCTATTTTTGGTCGTCCTCATCCTCATTGTTACCTGTGCTGAAATAACCATTGTGCTCTGCTACTTCCAGTTGTGCAGTGAGGATTACTCGTGGTGGTGGCGGTCATACCTCACCTCTGGTTCTTCTGCACTTTACCTCTTTCTTTATGCAACATTCTACTTCTTCACCAAGCTGGAAATCACAAAGTTGGTATCTGCAATATTTTACTTCGGTTACATGCTTATAGCTTCTTATGCGTTTTTCGTGGTAACCGGAACTATAGGATTTTATGCATGCCTTTGGTTCACAAGGCTTATCTACTCCTCAGTCAAAATTGATTAG 1914 0.4253 MAFLRSLAFSAVLLLLIHGAHCFYLPGVAPQDFIKGDQLQVKVNKLSSIKTQLPYSYYSLPYCAPKKIQDSAENLGEVLRGDRIENSRYVFKMREPEMCNIVCKIKLDAKTAKAFKEKINDEYRVNMILDNLPLVVPIKRNDQDSTVYQLGFHVGLKGQYSGSKEEKFFIHNHLAFTVKYHRDVQTESARIVGFEVKPFSVKHEYEQGQWLEKKTRLTTCDPHAKHTVINSNTPQEVEENKEIIFTYDVDFQESDVKWASRWDAYLLMNDDQIHWFSIVNSLMIVLFLSGMVAMIMLRTLYRDIAKYNELETQEEAQEETGWKLVHGDVFRPPSNSDLLCVYVGTGVQFFWMVLVTMMFAILGFLSPSNRGGLMTAMLLLWVFMGLFAGYSSARLYKMFKGSDWKKIALRTATMFPATVSLIFFILNALIWGQKSSGAVPFGTMFALVFLWFGISVPLVFVGGYVGFKKPAIESPVKTNKIPRQIPEQAWYMNPVFSVLIGGILPFGAVFIELFFILTSIWLNQFYYIFGFLFLVVLILIVTCAEITIVLCYFQLCSEDYSWWWRSYLTSGSSALYLFLYATFYFFTKLEITKLVSAIFYFGYMLIASYAFFVVTGTIGFYACLWFTRLIYSSVKID* 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g3941 637 Pfam Endomembrane protein 70 54 593 IPR004240 GO:0016021
Lja1g3941 637 PANTHER TRANSMEMBRANE 9 SUPERFAMILY MEMBER 5 637 - -
Lja1g3941 637 PANTHER TRANSMEMBRANE 9 SUPERFAMILY PROTEIN 5 637 IPR004240 GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g3941 Lja-Chr1 49964690 49968604 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g3941 1 637 Miscellaneous Gene Families AT5G10840 83.951 0.0 1103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g3941 K17086 - gmx:100804029 1162.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g3941 1 49964690 49968604 Lja1g3941 1 49964690 49968604 ECH